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114-545: The effect of POPs on human and environmental health was discussed, with intention to eliminate or severely restrict their production, by the international community at the Stockholm Convention on Persistent Organic Pollutants in 2001. Most POPs are pesticides or insecticides , and some are also solvents , pharmaceuticals , and industrial chemicals. Although some POPs arise naturally (e.g. from volcanoes), most are man-made. The "dirty dozen" POPs identified by

228-466: A futile cycle . Although fat is a common way of storing energy, in vertebrates such as humans the fatty acids in these stores cannot be converted to glucose through gluconeogenesis as these organisms cannot convert acetyl-CoA into pyruvate ; plants do, but animals do not, have the necessary enzymatic machinery. As a result, after long-term starvation, vertebrates need to produce ketone bodies from fatty acids to replace glucose in tissues such as

342-440: A DNA template from its viral RNA genome. RNA in ribozymes such as spliceosomes and ribosomes is similar to enzymes as it can catalyze chemical reactions. Individual nucleosides are made by attaching a nucleobase to a ribose sugar. These bases are heterocyclic rings containing nitrogen, classified as purines or pyrimidines . Nucleotides also act as coenzymes in metabolic-group-transfer reactions. Metabolism involves

456-714: A conference in Geneva on 8 May 2009. As of September 2022, there are 186 parties to the convention (185 states and the European Union ). Notable non-ratifying states include the United States, Israel, and Malaysia. The Stockholm Convention was adopted to EU legislation in Regulation (EC) No 850/2004. In 2019, the latter was replaced by Regulation (EU) 2019/1021. Key elements of the Convention include

570-423: A constant set of conditions within cells, a condition called homeostasis . Metabolic regulation also allows organisms to respond to signals and interact actively with their environments. Two closely linked concepts are important for understanding how metabolic pathways are controlled. Firstly, the regulation of an enzyme in a pathway is how its activity is increased and decreased in response to signals. Secondly,

684-429: A cycle of reactions that add the acyl group, reduce it to an alcohol, dehydrate it to an alkene group and then reduce it again to an alkane group. The enzymes of fatty acid biosynthesis are divided into two groups: in animals and fungi, all these fatty acid synthase reactions are carried out by a single multifunctional type I protein, while in plant plastids and bacteria separate type II enzymes perform each step in

798-564: A field study published in 2021 by researchers at Stockholm University found that they are often transferred from water to air when waves reach land, are a significant source of air pollution , and eventually get into rain. The researchers concluded that pollution may impact large areas. In 2024, a worldwide study of 45,000 groundwater samples found that 31% of samples contained levels of PFAS that were harmful to human health; these samples were taken from areas not near any obvious source of contamination. Current studies aimed at minimizing POPs in

912-458: A hydrogen acceptor. Hundreds of separate types of dehydrogenases remove electrons from their substrates and reduce NAD into NADH. This reduced form of the coenzyme is then a substrate for any of the reductases in the cell that need to transfer hydrogen atoms to their substrates. Nicotinamide adenine dinucleotide exists in two related forms in the cell, NADH and NADPH. The NAD /NADH form is more important in catabolic reactions, while NADP /NADPH

1026-558: A large group of compounds that contain fatty acids and glycerol ; a glycerol molecule attached to three fatty acids by ester linkages is called a triacylglyceride . Several variations of the basic structure exist, including backbones such as sphingosine in sphingomyelin , and hydrophilic groups such as phosphate in phospholipids . Steroids such as sterol are another major class of lipids. Carbohydrates are aldehydes or ketones , with many hydroxyl groups attached, that can exist as straight chains or rings. Carbohydrates are

1140-404: A larger increase in the entropy of their environments. The metabolism of a cell achieves this by coupling the spontaneous processes of catabolism to the non-spontaneous processes of anabolism. In thermodynamic terms, metabolism maintains order by creating disorder. As the environments of most organisms are constantly changing, the reactions of metabolism must be finely regulated to maintain

1254-457: A major sources for human exposure via inhalation and ingestion. Furthermore, significant indoor POP pollution must be a major route of human POP exposure, considering the modern trend in spending larger proportions of life indoors. Several studies have shown that indoor (air and dust) POP levels to exceed outdoor (air and soil) POP concentrations. In 2022, levels of at least four perfluoroalkyl acids (PFAAs) in rain water worldwide greatly exceeded

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1368-472: A membrane. Pumping protons out of the mitochondria creates a proton concentration difference across the membrane and generates an electrochemical gradient . This force drives protons back into the mitochondrion through the base of an enzyme called ATP synthase . The flow of protons makes the stalk subunit rotate, causing the active site of the synthase domain to change shape and phosphorylate adenosine diphosphate —turning it into ATP. Chemolithotrophy

1482-613: A particular location, government agencies may produce a human health risk assessment which takes into account the pollutants' bioavailability and their dose-response relationships . The majority of POPs are known to disrupt normal functioning of the endocrine system. Low level exposure to POPs during critical developmental periods of fetus, newborn and child can have a lasting effect throughout their lifespan. A 2002 study summarizes data on endocrine disruption and health complications from exposure to POPs during critical developmental stages in an organism's lifespan. The study aimed to answer

1596-604: A regulated fashion. From a developing country perspective, a lack of data and information about the sources, releases, and environmental levels of POPs hampers negotiations on specific compounds, and indicates a strong need for research. Another controversy would be certain POPs (which are continually active, specifically in the Arctic Biota) that were mentioned in the Stockholm Convention, but were not part of

1710-591: A set of xenobiotic-metabolizing enzymes. In humans, these include cytochrome P450 oxidases , UDP-glucuronosyltransferases , and glutathione S -transferases . This system of enzymes acts in three stages to firstly oxidize the xenobiotic (phase I) and then conjugate water-soluble groups onto the molecule (phase II). The modified water-soluble xenobiotic can then be pumped out of cells and in multicellular organisms may be further metabolized before being excreted (phase III). In ecology , these reactions are particularly important in microbial biodegradation of pollutants and

1824-459: A short ancestral pathway, the duplication and then divergence of entire pathways as well as the recruitment of pre-existing enzymes and their assembly into a novel reaction pathway. The relative importance of these mechanisms is unclear, but genomic studies have shown that enzymes in a pathway are likely to have a shared ancestry, suggesting that many pathways have evolved in a step-by-step fashion with novel functions created from pre-existing steps in

1938-530: A source of energy, while switching between carbon fixation and the fermentation of organic compounds. In many organisms, the capture of solar energy is similar in principle to oxidative phosphorylation, as it involves the storage of energy as a proton concentration gradient. This proton motive force then drives ATP synthesis. The electrons needed to drive this electron transport chain come from light-gathering proteins called photosynthetic reaction centres . Reaction centers are classified into two types depending on

2052-413: A vast array of chemical reactions, but most fall under a few basic types of reactions that involve the transfer of functional groups of atoms and their bonds within molecules. This common chemistry allows cells to use a small set of metabolic intermediates to carry chemical groups between different reactions. These group-transfer intermediates are called coenzymes . Each class of group-transfer reactions

2166-419: Is oxidative stress . Here, processes including oxidative phosphorylation and the formation of disulfide bonds during protein folding produce reactive oxygen species such as hydrogen peroxide . These damaging oxidants are removed by antioxidant metabolites such as glutathione and enzymes such as catalases and peroxidases . Living organisms must obey the laws of thermodynamics , which describe

2280-571: Is a type of metabolism found in prokaryotes where energy is obtained from the oxidation of inorganic compounds . These organisms can use hydrogen , reduced sulfur compounds (such as sulfide , hydrogen sulfide and thiosulfate ), ferrous iron (Fe(II)) or ammonia as sources of reducing power and they gain energy from the oxidation of these compounds. These microbial processes are important in global biogeochemical cycles such as acetogenesis , nitrification and denitrification and are critical for soil fertility . The energy in sunlight

2394-438: Is adsorption. It occurs when an absorbable solute comes into contact with a solid with a porous surface structure. This technique was investigated by Mohamed Nageeb Rashed of Aswan University, Egypt. Current efforts are more focused on banning the use and production of POPs worldwide rather than removal of POPs. Stockholm Convention on Persistent Organic Pollutants Stockholm Convention on Persistent Organic Pollutants

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2508-621: Is an international environmental treaty , signed on 22 May 2001 in Stockholm and effective from 17 May 2004, that aims to eliminate or restrict the production and use of persistent organic pollutants (POPs). In 1995, the Governing Council of the United Nations Environment Programme (UNEP) called for global action to be taken on POPs, which it defined as "chemical substances that persist in

2622-401: Is an organic compound needed in small quantities that cannot be made in cells. In human nutrition , most vitamins function as coenzymes after modification; for example, all water-soluble vitamins are phosphorylated or are coupled to nucleotides when they are used in cells. Nicotinamide adenine dinucleotide (NAD ), a derivative of vitamin B 3 ( niacin ), is an important coenzyme that acts as

2736-446: Is called gluconeogenesis . Gluconeogenesis converts pyruvate to glucose-6-phosphate through a series of intermediates, many of which are shared with glycolysis . However, this pathway is not simply glycolysis run in reverse, as several steps are catalyzed by non-glycolytic enzymes. This is important as it allows the formation and breakdown of glucose to be regulated separately, and prevents both pathways from running simultaneously in

2850-409: Is captured by plants , cyanobacteria , purple bacteria , green sulfur bacteria and some protists . This process is often coupled to the conversion of carbon dioxide into organic compounds, as part of photosynthesis, which is discussed below. The energy capture and carbon fixation systems can, however, operate separately in prokaryotes, as purple bacteria and green sulfur bacteria can use sunlight as

2964-405: Is carried out by a particular coenzyme, which is the substrate for a set of enzymes that produce it, and a set of enzymes that consume it. These coenzymes are therefore continuously made, consumed and then recycled. One central coenzyme is adenosine triphosphate (ATP), the energy currency of cells. This nucleotide is used to transfer chemical energy between different chemical reactions. There

3078-645: Is carried out by the enzyme RuBisCO as part of the Calvin–Benson cycle . Three types of photosynthesis occur in plants, C3 carbon fixation , C4 carbon fixation and CAM photosynthesis . These differ by the route that carbon dioxide takes to the Calvin cycle, with C3 plants fixing CO 2 directly, while C4 and CAM photosynthesis incorporate the CO 2 into other compounds first, as adaptations to deal with intense sunlight and dry conditions. In photosynthetic prokaryotes

3192-489: Is composed of 31 experts nominated by parties from the five United Nations regional groups and reviews nominated chemicals in three stages. The Committee first determines whether the substance fulfills POP screening criteria detailed in Annex D of the convention, relating to its persistence, bioaccumulation, potential for long-range environmental transport (LRET), and toxicity. If a substance is deemed to fulfill these requirements,

3306-485: Is composed of a phosphate attached to a ribose or deoxyribose sugar group which is attached to a nitrogenous base . Nucleic acids are critical for the storage and use of genetic information, and its interpretation through the processes of transcription and protein biosynthesis . This information is protected by DNA repair mechanisms and propagated through DNA replication . Many viruses have an RNA genome , such as HIV , which uses reverse transcription to create

3420-506: Is enhanced (or depressed) by the presence of other compounds in the mixture. When put together, the effects can far exceed the approximated additive effects of the POP compound mixture. Traditionally it was thought that human exposure to POPs occurred primarily through food , however indoor pollution patterns that characterize certain POPs have challenged this notion. Recent studies of indoor dust and air have implicated indoor environments as

3534-477: Is its primary structure . Just as the letters of the alphabet can be combined to form an almost endless variety of words, amino acids can be linked in varying sequences to form a huge variety of proteins. Proteins are made from amino acids that have been activated by attachment to a transfer RNA molecule through an ester bond. This aminoacyl-tRNA precursor is produced in an ATP -dependent reaction carried out by an aminoacyl tRNA synthetase . This aminoacyl-tRNA

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3648-635: Is likely due to their efficacy . In various diseases, such as type II diabetes , metabolic syndrome , and cancer , normal metabolism is disrupted. The metabolism of cancer cells is also different from the metabolism of normal cells, and these differences can be used to find targets for therapeutic intervention in cancer. Most of the structures that make up animals, plants and microbes are made from four basic classes of molecules : amino acids , carbohydrates , nucleic acid and lipids (often called fats ). As these molecules are vital for life, metabolic reactions either focus on making these molecules during

3762-563: Is needed, or back to glucose in the Cori cycle . An alternative route for glucose breakdown is the pentose phosphate pathway , which produces less energy but supports anabolism (biomolecule synthesis). This pathway reduces the coenzyme NADP to NADPH and produces pentose compounds such as ribose 5-phosphate for synthesis of many biomolecules such as nucleotides and aromatic amino acids . Fats are catabolized by hydrolysis to free fatty acids and glycerol. The glycerol enters glycolysis and

3876-478: Is only a small amount of ATP in cells, but as it is continuously regenerated, the human body can use about its own weight in ATP per day. ATP acts as a bridge between catabolism and anabolism . Catabolism breaks down molecules, and anabolism puts them together. Catabolic reactions generate ATP, and anabolic reactions consume it. It also serves as a carrier of phosphate groups in phosphorylation reactions. A vitamin

3990-411: Is produced in response to rises in blood glucose levels . Binding of the hormone to insulin receptors on cells then activates a cascade of protein kinases that cause the cells to take up glucose and convert it into storage molecules such as fatty acids and glycogen . The metabolism of glycogen is controlled by activity of phosphorylase , the enzyme that breaks down glycogen, and glycogen synthase ,

4104-546: Is scarce, or when cells undergo metabolic stress. Lipids are the most diverse group of biochemicals. Their main structural uses are as part of internal and external biological membranes , such as the cell membrane . Their chemical energy can also be used. Lipids contain a long, non-polar hydrocarbon chain with a small polar region containing oxygen. Lipids are usually defined as hydrophobic or amphipathic biological molecules but will dissolve in organic solvents such as ethanol , benzene or chloroform . The fats are

4218-420: Is the economic and political impact it can have among various countries and businesses. Metabolism Metabolism ( / m ə ˈ t æ b ə l ɪ z ə m / , from Greek : μεταβολή metabolē , "change") is the set of life -sustaining chemical reactions in organisms . The three main functions of metabolism are: the conversion of the energy in food to energy available to run cellular processes;

4332-617: Is the measure of the amount of energy consumed by all of these chemical reactions. A striking feature of metabolism is the similarity of the basic metabolic pathways among vastly different species. For example, the set of carboxylic acids that are best known as the intermediates in the citric acid cycle are present in all known organisms, being found in species as diverse as the unicellular bacterium Escherichia coli and huge multicellular organisms like elephants . These similarities in metabolic pathways are likely due to their early appearance in evolutionary history , and their retention

4446-422: Is the synthesis of carbohydrates from sunlight and carbon dioxide (CO 2 ). In plants, cyanobacteria and algae, oxygenic photosynthesis splits water, with oxygen produced as a waste product. This process uses the ATP and NADPH produced by the photosynthetic reaction centres , as described above, to convert CO 2 into glycerate 3-phosphate , which can then be converted into glucose. This carbon-fixation reaction

4560-495: Is then a substrate for the ribosome , which joins the amino acid onto the elongating protein chain, using the sequence information in a messenger RNA . Nucleotides are made from amino acids, carbon dioxide and formic acid in pathways that require large amounts of metabolic energy. Consequently, most organisms have efficient systems to salvage preformed nucleotides. Purines are synthesized as nucleosides (bases attached to ribose ). Both adenine and guanine are made from

4674-423: Is transformed through a series of steps into another chemical, each step being facilitated by a specific enzyme . Enzymes are crucial to metabolism because they allow organisms to drive desirable reactions that require energy and will not occur by themselves, by coupling them to spontaneous reactions that release energy. Enzymes act as catalysts —they allow a reaction to proceed more rapidly—and they also allow

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4788-429: Is used in anabolic reactions. Inorganic elements play critical roles in metabolism; some are abundant (e.g. sodium and potassium ) while others function at minute concentrations. About 99% of a human's body weight is made up of the elements carbon , nitrogen , calcium , sodium , chlorine , potassium , hydrogen , phosphorus , oxygen and sulfur . Organic compounds (proteins, lipids and carbohydrates) contain

4902-638: The Arctic Circle . POPs can be present as vapors in the atmosphere or bound to the surface of solid particles ( aerosols ). A determining factor for the long-range transport is the fraction of a POP that is adsorbed on aerosols. In adsorbed form it is – as opposed to the gas phase – protected from photo-oxidation, i.e. direct photolysis as well as oxidation by OH radicals or ozone. POPs have low solubility in water but are easily captured by solid particles, and are soluble in organic fluids ( oils , fats , and liquid fuels ). POPs are not easily degraded in

5016-426: The bioremediation of contaminated land and oil spills. Many of these microbial reactions are shared with multicellular organisms, but due to the incredible diversity of types of microbes these organisms are able to deal with a far wider range of xenobiotics than multicellular organisms, and can degrade even persistent organic pollutants such as organochloride compounds. A related problem for aerobic organisms

5130-503: The chloroplast . These protons move back through the membrane as they drive the ATP synthase, as before. The electrons then flow through photosystem I and can then be used to reduce the coenzyme NADP . This coenzyme can enter the Calvin cycle or be recycled for further ATP generation. Anabolism is the set of constructive metabolic processes where the energy released by catabolism is used to synthesize complex molecules. In general,

5244-467: The control exerted by this enzyme is the effect that these changes in its activity have on the overall rate of the pathway (the flux through the pathway). For example, an enzyme may show large changes in activity (i.e. it is highly regulated) but if these changes have little effect on the flux of a metabolic pathway, then this enzyme is not involved in the control of the pathway. There are multiple levels of metabolic regulation. In intrinsic regulation,

5358-441: The cytoskeleton , a system of scaffolding that maintains the cell shape. Proteins are also important in cell signaling , immune responses , cell adhesion , active transport across membranes, and the cell cycle . Amino acids also contribute to cellular energy metabolism by providing a carbon source for entry into the citric acid cycle ( tricarboxylic acid cycle ), especially when a primary source of energy, such as glucose ,

5472-644: The fatty tissues of living organisms including human tissues for long periods of time. Persistent chemicals tend to have higher concentrations and are eliminated more slowly. Dietary accumulation or bioaccumulation is another hallmark characteristic of POPs, as POPs move up the food chain, they increase in concentration as they are processed and metabolized in certain tissues of organisms. The natural capacity for animals gastrointestinal tract to concentrate ingested chemicals, along with poorly metabolized and hydrophobic nature of POPs, makes such compounds highly susceptible to bioaccumulation. Thus POPs not only persist in

5586-418: The gas phase under certain environmental temperatures and volatilize from soils , vegetation , and bodies of water into the atmosphere , resisting breakdown reactions in the air, to travel long distances before being re-deposited. This results in accumulation of POPs in areas far from where they were used or emitted, specifically environments where POPs have never been introduced such as Antarctica , and

5700-406: The last universal common ancestor . This universal ancestral cell was prokaryotic and probably a methanogen that had extensive amino acid, nucleotide, carbohydrate and lipid metabolism. The retention of these ancient pathways during later evolution may be the result of these reactions having been an optimal solution to their particular metabolic problems, with pathways such as glycolysis and

5814-493: The male reproductive system , such as decreased sperm quality and quantity, altered sex ratio and early puberty onset. For females exposed to POPs, altered reproductive tissues and pregnancy outcomes as well as endometriosis have been reported. A Greek study from 2014 investigated the link between maternal weight gain during pregnancy, their PCB -exposure level and PCB level in their newborn infants, their birth weight , gestational age , and head circumference. The lower

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5928-550: The mevalonate pathway produces these compounds from acetyl-CoA, while in plants and bacteria the non-mevalonate pathway uses pyruvate and glyceraldehyde 3-phosphate as substrates. One important reaction that uses these activated isoprene donors is sterol biosynthesis . Here, the isoprene units are joined to make squalene and then folded up and formed into a set of rings to make lanosterol . Lanosterol can then be converted into other sterols such as cholesterol and ergosterol . Organisms vary in their ability to synthesize

6042-426: The regulation of the rate of a metabolic reaction, for example in response to changes in the cell's environment or to signals from other cells. The metabolic system of a particular organism determines which substances it will find nutritious and which poisonous . For example, some prokaryotes use hydrogen sulfide as a nutrient, yet this gas is poisonous to animals. The basal metabolic rate of an organism

6156-407: The stomach and pancreas , and in salivary glands . The amino acids or sugars released by these extracellular enzymes are then pumped into cells by active transport proteins. Carbohydrate catabolism is the breakdown of carbohydrates into smaller units. Carbohydrates are usually taken into cells after they have been digested into monosaccharides such as glucose and fructose . Once inside,

6270-589: The "dirty dozen", of chemicals that are classified as POPs. As of 2024, the United States has signed the Stockholm Convention but has not ratified it. There are a handful of other countries that have not ratified the convention but most countries in the world have ratified the convention. In May 1995, the UNEP Governing Council investigated POPs. Initially the Convention recognized only twelve POPs for their adverse effects on human health and

6384-428: The 20 common amino acids. Most bacteria and plants can synthesize all twenty, but mammals can only synthesize eleven nonessential amino acids, so nine essential amino acids must be obtained from food. Some simple parasites , such as the bacteria Mycoplasma pneumoniae , lack all amino acid synthesis and take their amino acids directly from their hosts. All amino acids are synthesized from intermediates in glycolysis,

6498-574: The Committee then drafts a risk profile according to Annex E to evaluate whether the substance is likely, as a result of its LRET, to lead to significant adverse human health and/or environmental effects and therefore warrants global action. Finally, if the POPRC finds that global action is warranted, it develops a risk management evaluation, according to Annex F, reflecting socioeconomic considerations associated with possible control measures. Based on this,

6612-469: The Dirty Dozen such as perfluorooctane sulfonate (PFOS). PFOS have many general uses such as stain repellents but have many properties which can make it a dangerous due to the fact that PFOS can be highly resistant to environmental breakdown. PFOS can be toxic in terms of increased offspring death, decrease in body weight, and the disruption of neurological systems. What makes this compound controversial

6726-460: The EPA's lifetime drinking water health advisories as well as comparable Danish, Dutch, and European Union safety standards, leading to the conclusion that "the global spread of these four PFAAs in the atmosphere has led to the planetary boundary for chemical pollution being exceeded". It had been thought that PFAAs would eventually end up in the oceans, where they would be diluted over decades, but

6840-611: The POPRC decides to recommend that the COP list the substance under one or more of the annexes to the convention. The POPRC has met annually in Geneva, Switzerland, since its establishment. The seventh meeting of the Persistent Organic Pollutants Review Committee (POPRC-7) of the Stockholm Convention on Persistent Organic Pollutants (POPs) took place from 10 to 14 October 2011 in Geneva. POPRC-8

6954-488: The Stockholm Convention include aldrin , chlordane , dieldrin , endrin , heptachlor , HCB , mirex , toxaphene , PCBs , DDT , dioxins , and polychlorinated dibenzofurans . However, there have since been many new POPs added (e.g. PFOS ). POPs typically are halogenated organic compounds (see lists below) and as such exhibit high lipid solubility . For this reason, they bioaccumulate in fatty tissues . Halogenated compounds also exhibit great stability reflecting

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7068-510: The birth weight and head circumference of the infants was, the higher POP levels during prenatal development had been, but only if mothers had either excessive or inadequate weight gain during pregnancy. No correlation between POP exposure and gestational age was found. A 2013 case-control study conducted 2009 in Indian mothers and their offspring showed prenatal exposure of two types of organochlorine pesticides ( HCH , DDT and DDE ) impaired

7182-431: The brain that cannot metabolize fatty acids. In other organisms such as plants and bacteria, this metabolic problem is solved using the glyoxylate cycle , which bypasses the decarboxylation step in the citric acid cycle and allows the transformation of acetyl-CoA to oxaloacetate , where it can be used for the production of glucose. Other than fat, glucose is stored in most tissues, as an energy resource available within

7296-439: The cell for energy. M. tuberculosis can also grow on the lipid cholesterol as a sole source of carbon, and genes involved in the cholesterol-use pathway(s) have been validated as important during various stages of the infection lifecycle of M. tuberculosis . Amino acids are either used to synthesize proteins and other biomolecules, or oxidized to urea and carbon dioxide to produce energy. The oxidation pathway starts with

7410-441: The citric acid cycle producing their end products highly efficiently and in a minimal number of steps. The first pathways of enzyme-based metabolism may have been parts of purine nucleotide metabolism, while previous metabolic pathways were a part of the ancient RNA world . Many models have been proposed to describe the mechanisms by which novel metabolic pathways evolve. These include the sequential addition of novel enzymes to

7524-416: The citric acid cycle, or the pentose phosphate pathway. Nitrogen is provided by glutamate and glutamine . Nonessensial amino acid synthesis depends on the formation of the appropriate alpha-keto acid, which is then transaminated to form an amino acid. Amino acids are made into proteins by being joined in a chain of peptide bonds . Each different protein has a unique sequence of amino acid residues: this

7638-637: The coenzyme nicotinamide adenine dinucleotide (NAD ) into NADH. Macromolecules cannot be directly processed by cells. Macromolecules must be broken into smaller units before they can be used in cell metabolism. Different classes of enzymes are used to digest these polymers. These digestive enzymes include proteases that digest proteins into amino acids, as well as glycoside hydrolases that digest polysaccharides into simple sugars known as monosaccharides . Microbes simply secrete digestive enzymes into their surroundings, while animals only secrete these enzymes from specialized cells in their guts , including

7752-534: The complex molecules that make up cellular structures are constructed step-by-step from smaller and simpler precursors. Anabolism involves three basic stages. First, the production of precursors such as amino acids , monosaccharides , isoprenoids and nucleotides , secondly, their activation into reactive forms using energy from ATP, and thirdly, the assembly of these precursors into complex molecules such as proteins , polysaccharides , lipids and nucleic acids . Anabolism in organisms can be different according to

7866-488: The construction of cells and tissues, or on breaking them down and using them to obtain energy, by their digestion. These biochemicals can be joined to make polymers such as DNA and proteins , essential macromolecules of life. Proteins are made of amino acids arranged in a linear chain joined by peptide bonds . Many proteins are enzymes that catalyze the chemical reactions in metabolism. Other proteins have structural or mechanical functions, such as those that form

7980-588: The convention, and delegates adopted the Stockholm Convention on POPs at the Conference of the Plenipotentiaries convened from 22 to 23 May 2001 in Stockholm , Sweden. The negotiations for the convention were completed on 23 May 2001 in Stockholm. The convention entered into force on 17 May 2004 with ratification by an initial 128 parties and 151 signatories. Co-signatories agree to outlaw nine of

8094-716: The convention: chlorinated naphthalenes (CNs), hexachlorobutadiene (HCBD) and pentachlorophenol (PCP), its salts and esters. The proposal is the first stage of the POPRC's work in assessing a substance, and requires the POPRC to assess whether the proposed chemical satisfies the criteria in Annex D of the convention. The criteria for forwarding a proposed chemical to the risk profile preparation stage are persistence, bioaccumulation, potential for long-range environmental transport (LRET), and adverse effects. POPRC-8 proposed hexabromocyclododecane for listing in Annex A, with specific exemptions for production and use in expanded polystyrene and extruded polystyrene in buildings. This proposal

8208-422: The conversion of food to building blocks of proteins , lipids , nucleic acids , and some carbohydrates ; and the elimination of metabolic wastes . These enzyme -catalyzed reactions allow organisms to grow and reproduce, maintain their structures , and respond to their environments. The word metabolism can also refer to the sum of all chemical reactions that occur in living organisms, including digestion and

8322-414: The critical development time frames are in utero , in ovo , and during reproductive periods. In humans, the critical development timeframe is during fetal development . The same study in 2002 with evidence of a link from POPs to endocrine disruption also linked low dose exposure of POPs to reproductive health effects. The study stated that POP exposure can lead to negative health effects especially in

8436-415: The dirty dozen chemicals, limit the use of DDT to malaria control, and curtail inadvertent production of dioxins and furans . Parties to the convention have agreed to a process by which persistent toxic compounds can be reviewed and added to the convention, if they meet certain criteria for persistence and transboundary threat. The first set of new chemicals to be added to the convention were agreed at

8550-445: The electrons removed from organic molecules in areas such as the citric acid cycle are transferred to oxygen and the energy released is used to make ATP. This is done in eukaryotes by a series of proteins in the membranes of mitochondria called the electron transport chain . In prokaryotes , these proteins are found in the cell's inner membrane . These proteins use the energy from reduced molecules like NADH to pump protons across

8664-683: The end of the reaction catalyzed. Metal micronutrients are taken up into organisms by specific transporters and bind to storage proteins such as ferritin or metallothionein when not in use. Catabolism is the set of metabolic processes that break down large molecules. These include breaking down and oxidizing food molecules. The purpose of the catabolic reactions is to provide the energy and components needed by anabolic reactions which build molecules. The exact nature of these catabolic reactions differ from organism to organism, and organisms can be classified based on their sources of energy, hydrogen, and carbon (their primary nutritional groups ), as shown in

8778-450: The environment are investigating their behavior in photocatalytic oxidation reactions . POPs that are found in humans and in aquatic environments the most are the main subjects of these experiments. Aromatic and aliphatic degradation products have been identified in these reactions. Photochemical degradation is negligible compared to photocatalytic degradation. A method of removal of POPs from marine environments that has been explored

8892-446: The environment due to their stability and low decomposition rates. Due to this capacity for long-range transport, POP environmental contamination is extensive, even in areas where POPs have never been used, and will remain in these environments years after restrictions implemented due to their resistance to degradation. Bioaccumulation of POPs is typically associated with the compounds high lipid solubility and ability to accumulate in

9006-573: The environment, bio-accumulate through the food web , and pose a risk of causing adverse effects to human health and the environment". Following this, the Intergovernmental Forum on Chemical Safety (IFCS) and the International Programme on Chemical Safety (IPCS) prepared an assessment of the 12 worst offenders, known as the dirty dozen . The INC met five times between June 1998 and December 2000 to elaborate

9120-461: The environment, but also as they are taken in by animals they bioaccumulate, increasing their concentration and toxicity in the environment. This increase in concentration is called biomagnification, which is where organisms higher up in the food chain have a greater accumulation of POPs. Bioaccumulation and long-range transport are the reason why POPs can accumulate in organisms like whales, even in remote areas like Antarctica. The Stockholm Convention

9234-406: The environment, placing a global ban on these particularly harmful and toxic compounds and requiring its parties to take measures to eliminate or reduce the release of POPs in the environment. Since 2001, this list has been expanded to include some polycyclic aromatic hydrocarbons (PAHs), brominated flame retardants , and other compounds. Additions to the initial 2001 Stockholm Convention list are

9348-469: The enzyme that makes it. These enzymes are regulated in a reciprocal fashion, with phosphorylation inhibiting glycogen synthase, but activating phosphorylase. Insulin causes glycogen synthesis by activating protein phosphatases and producing a decrease in the phosphorylation of these enzymes. The central pathways of metabolism described above, such as glycolysis and the citric acid cycle, are present in all three domains of living things and were present in

9462-650: The exchange of electrolytes between the extracellular fluid and the cell's fluid, the cytosol . Electrolytes enter and leave cells through proteins in the cell membrane called ion channels . For example, muscle contraction depends upon the movement of calcium, sodium and potassium through ion channels in the cell membrane and T-tubules . Transition metals are usually present as trace elements in organisms, with zinc and iron being most abundant of those. Metal cofactors are bound tightly to specific sites in proteins; although enzyme cofactors can be modified during catalysis, they always return to their original state by

9576-414: The fatty acids are broken down by beta oxidation to release acetyl-CoA, which then is fed into the citric acid cycle. Fatty acids release more energy upon oxidation than carbohydrates. Steroids are also broken down by some bacteria in a process similar to beta oxidation, and this breakdown process involves the release of significant amounts of acetyl-CoA, propionyl-CoA, and pyruvate, which can all be used by

9690-484: The first stage, large organic molecules, such as proteins , polysaccharides or lipids , are digested into their smaller components outside cells. Next, these smaller molecules are taken up by cells and converted to smaller molecules, usually acetyl coenzyme A (acetyl-CoA), which releases some energy. Finally, the acetyl group on acetyl-CoA is oxidized to water and carbon dioxide in the citric acid cycle and electron transport chain , releasing more energy while reducing

9804-404: The following POPs: POP exposure may cause developmental defects, chronic illnesses, and death. Some are carcinogens per IARC , possibly including breast cancer . Many POPs are capable of endocrine disruption within the reproductive system , the central nervous system , or the immune system . People and animals are exposed to POPs mostly through their diet, occupationally, or while growing in

9918-405: The form of water-soluble messengers such as hormones and growth factors and are detected by specific receptors on the cell surface. These signals are then transmitted inside the cell by second messenger systems that often involved the phosphorylation of proteins. A very well understood example of extrinsic control is the regulation of glucose metabolism by the hormone insulin . Insulin

10032-417: The growth of the fetus , reduced the birth weight, length, head circumference and chest circumference. Evaluation of the effects of POPs on health is very challenging in the laboratory setting. For example, for organisms exposed to a mixture of POPs, the effects are assumed to be additive . Mixtures of POPs can in principle produce synergistic effects . With synergistic effects, the toxicity of each compound

10146-529: The major route of breakdown is glycolysis , in which glucose is converted into pyruvate . This process generates the energy-conveying molecule NADH from NAD , and generates ATP from ADP for use in powering many processes within the cell. Pyruvate is an intermediate in several metabolic pathways, but the majority is converted to acetyl-CoA and fed into the citric acid cycle , which enables more ATP production by means of oxidative phosphorylation . This oxidation consumes molecular oxygen and releases water and

10260-506: The majority of the carbon and nitrogen; most of the oxygen and hydrogen is present as water. The abundant inorganic elements act as electrolytes . The most important ions are sodium , potassium , calcium , magnesium , chloride , phosphate and the organic ion bicarbonate . The maintenance of precise ion gradients across cell membranes maintains osmotic pressure and pH . Ions are also critical for nerve and muscle function, as action potentials in these tissues are produced by

10374-680: The mechanisms of carbon fixation are more diverse. Here, carbon dioxide can be fixed by the Calvin–Benson cycle, a reversed citric acid cycle, or the carboxylation of acetyl-CoA. Prokaryotic chemoautotrophs also fix CO 2 through the Calvin–Benson cycle, but use energy from inorganic compounds to drive the reaction. In carbohydrate anabolism, simple organic acids can be converted into monosaccharides such as glucose and then used to assemble polysaccharides such as starch . The generation of glucose from compounds like pyruvate , lactate , glycerol , glycerate 3-phosphate and amino acids

10488-482: The metabolic pathway self-regulates to respond to changes in the levels of substrates or products; for example, a decrease in the amount of product can increase the flux through the pathway to compensate. This type of regulation often involves allosteric regulation of the activities of multiple enzymes in the pathway. Extrinsic control involves a cell in a multicellular organism changing its metabolism in response to signals from other cells. These signals are usually in

10602-512: The most abundant biological molecules, and fill numerous roles, such as the storage and transport of energy ( starch , glycogen ) and structural components ( cellulose in plants, chitin in animals). The basic carbohydrate units are called monosaccharides and include galactose , fructose , and most importantly glucose . Monosaccharides can be linked together to form polysaccharides in almost limitless ways. The two nucleic acids, DNA and RNA , are polymers of nucleotides . Each nucleotide

10716-420: The nature of photosynthetic pigment present, with most photosynthetic bacteria only having one type, while plants and cyanobacteria have two. In plants, algae, and cyanobacteria, photosystem II uses light energy to remove electrons from water, releasing oxygen as a waste product. The electrons then flow to the cytochrome b6f complex , which uses their energy to pump protons across the thylakoid membrane in

10830-645: The nonreactivity of C-Cl bonds toward hydrolysis and photolytic degradation . The stability and lipophilicity of organic compounds often correlates with their halogen content, thus polyhalogenated organic compounds are of particular concern. They exert their negative effects on the environment through two processes: long range transport, which allows them to travel far from their source, and bioaccumulation, which reconcentrates these chemical compounds to potentially dangerous levels. Compounds that make up POPs are also classed as PBTs (persistent, bioaccumulative and toxic) or TOMPs (toxic organic micro pollutants). POPs enter

10944-412: The pathway. Terpenes and isoprenoids are a large class of lipids that include the carotenoids and form the largest class of plant natural products . These compounds are made by the assembly and modification of isoprene units donated from the reactive precursors isopentenyl pyrophosphate and dimethylallyl pyrophosphate . These precursors can be made in different ways. In animals and archaea,

11058-401: The potential human and environmental toxicity of POPs. They recognize that POPs have the potential for long-range transport and bioaccumulation and biomagnification. The convention seeks to study and then judge whether or not a number of chemicals that have been developed with advances in technology and science can be categorized as POPs. The initial meeting in 2001 made a preliminary list, termed

11172-674: The precursor nucleoside inosine monophosphate, which is synthesized using atoms from the amino acids glycine , glutamine , and aspartic acid , as well as formate transferred from the coenzyme tetrahydrofolate . Pyrimidines , on the other hand, are synthesized from the base orotate , which is formed from glutamine and aspartate. All organisms are constantly exposed to compounds that they cannot use as foods and that would be harmful if they accumulated in cells, as they have no metabolic function. These potentially damaging compounds are called xenobiotics . Xenobiotics such as synthetic drugs , natural poisons and antibiotics are detoxified by

11286-521: The provision on identifying new POPs. When adopting the convention, provision was made for a procedure to identify additional POPs and the criteria to be considered in doing so. At the first meeting of the Conference of the Parties (COP1), held in Punta del Este, Uruguay, from 2–6 May 2005, the POPRC was established to consider additional candidates nominated for listing under the convention. The committee

11400-474: The question whether or not chronic, low level exposure to POPs can have a health impact on the endocrine system and development of organisms from different species. The study found that exposure of POPs during a critical developmental time frame can produce a permanent changes in the organisms path of development. Exposure of POPs during non-critical developmental time frames may not lead to detectable diseases and health complications later in their life. In wildlife,

11514-430: The removal of the amino group by a transaminase . The amino group is fed into the urea cycle , leaving a deaminated carbon skeleton in the form of a keto acid . Several of these keto acids are intermediates in the citric acid cycle, for example α- ketoglutarate formed by deamination of glutamate . The glucogenic amino acids can also be converted into glucose, through gluconeogenesis . In oxidative phosphorylation,

11628-416: The requirement that developed countries provide new and additional financial resources and measures to eliminate production and use of intentionally produced POPs, eliminate unintentionally produced POPs where feasible, and manage and dispose of POPs wastes in an environmentally sound manner. Precaution is exercised throughout the Stockholm Convention, with specific references in the preamble, the objective, and

11742-627: The source of constructed molecules in their cells. Autotrophs such as plants can construct the complex organic molecules in their cells such as polysaccharides and proteins from simple molecules like carbon dioxide and water. Heterotrophs , on the other hand, require a source of more complex substances, such as monosaccharides and amino acids, to produce these complex molecules. Organisms can be further classified by ultimate source of their energy: photoautotrophs and photoheterotrophs obtain energy from light, whereas chemoautotrophs and chemoheterotrophs obtain energy from oxidation reactions. Photosynthesis

11856-425: The substrate can be acceptors, the polysaccharides produced can have straight or branched structures. The polysaccharides produced can have structural or metabolic functions themselves, or be transferred to lipids and proteins by the enzymes oligosaccharyltransferases . Fatty acids are made by fatty acid synthases that polymerize and then reduce acetyl-CoA units. The acyl chains in the fatty acids are extended by

11970-826: The table below. Organic molecules are used as a source of hydrogen atoms or electrons by organotrophs , while lithotrophs use inorganic substrates. Whereas phototrophs convert sunlight to chemical energy , chemotrophs depend on redox reactions that involve the transfer of electrons from reduced donor molecules such as organic molecules , hydrogen , hydrogen sulfide or ferrous ions to oxygen , nitrate or sulfate . In animals, these reactions involve complex organic molecules that are broken down to simpler molecules, such as carbon dioxide and water. Photosynthetic organisms, such as plants and cyanobacteria , use similar electron-transfer reactions to store energy absorbed from sunlight. The most common set of catabolic reactions in animals can be separated into three main stages. In

12084-407: The tissue through glycogenesis which was usually being used to maintained glucose level in blood. Polysaccharides and glycans are made by the sequential addition of monosaccharides by glycosyltransferase from a reactive sugar-phosphate donor such as uridine diphosphate glucose (UDP-Glc) to an acceptor hydroxyl group on the growing polysaccharide. As any of the hydroxyl groups on the ring of

12198-480: The transfer of heat and work . The second law of thermodynamics states that in any isolated system , the amount of entropy (disorder) cannot decrease. Although living organisms' amazing complexity appears to contradict this law, life is possible as all organisms are open systems that exchange matter and energy with their surroundings. Living systems are not in equilibrium , but instead are dissipative systems that maintain their state of high complexity by causing

12312-637: The transportation of substances into and between different cells, in which case the above described set of reactions within the cells is called intermediary (or intermediate) metabolism. Metabolic reactions may be categorized as catabolic —the breaking down of compounds (for example, of glucose to pyruvate by cellular respiration ); or anabolic —the building up ( synthesis ) of compounds (such as proteins, carbohydrates, lipids, and nucleic acids). Usually, catabolism releases energy, and anabolism consumes energy. The chemical reactions of metabolism are organized into metabolic pathways , in which one chemical

12426-438: The treaty is responsible for the continuing death toll from malaria, in reality the treaty specifically permits the public health use of DDT for the control of mosquitoes (the malaria vector ). There are also ways to prevent high amounts of DDT consumed by using other malaria controls such as window screens. As long as there are specific measures taken, such as use of DDT indoors, then the limited amount of DDT can be used in

12540-465: The waste product carbon dioxide. When oxygen is lacking, or when pyruvate is temporarily produced faster than it can be consumed by the citric acid cycle (as in intense muscular exertion), pyruvate is converted to lactate by the enzyme lactate dehydrogenase , a process that also oxidizes NADH back to NAD for re-use in further glycolysis, allowing energy production to continue. The lactate is later converted back to pyruvate for ATP production where energy

12654-456: The womb. For humans not exposed to POPs through accidental or occupational means, over 90% of exposure comes from animal product foods due to bioaccumulation in fat tissues and bioaccumulate through the food chain. In general, POP serum levels increase with age and tend to be higher in females than males. Studies have investigated the correlation between low level exposure of POPs and various diseases. In order to assess disease risk due to POPs in

12768-528: Was adopted and put into practice by the United Nations Environment Programme (UNEP) on May 22, 2001. The UNEP decided that POP regulation needed to be addressed globally for the future. The purpose statement of the agreement is "to protect human health and the environment from persistent organic pollutants." As of 2024, there are 185 countries plus the European Union have ratified the Stockholm Convention. The convention and its participants have recognized

12882-712: Was agreed at the sixth Conference of Parties on 28 April-10 May 2013. POPRC-9 proposed di-, tri-, tetra-, penta-, hexa-, hepta- and octa-chlorinated naphthalenes , and hexachlorobutadiene for listing in Annexes A and C. It also set up further work on pentachlorophenol, its salts and esters, and decabromodiphenyl ether, perfluorooctanesulfonic acid, its salts and perfluorooctane sulfonyl chloride. POPRC-15 proposed PFHxS for listing in Annex A without specific exemptions. Currently, chlorpyrifos , long-chain perfluorocarboxylic acids and medium-chain chlorinated paraffins are under review. Although some critics have alleged that

12996-516: Was held from 15 to 19 October 2012 in Geneva, POPRC-9 to POPRC-15 were held in Rome, while POPRC-16 needed to be held online. There were initially twelve distinct chemicals ("dirty dozen") listed in three categories. Two chemicals, hexachlorobenzene and polychlorinated biphenyls, were listed in both categories A and C. Currently, five chemicals are listed in both categories. POPRC-7 considered three proposals for listing in Annexes A, B and/or C of

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