Misplaced Pages

#858141

82-479: Medicinal chemistry is a highly interdisciplinary science combining organic chemistry with biochemistry , computational chemistry , pharmacology , molecular biology , statistics , and physical chemistry . Compounds used as medicines are most often organic compounds , which are often divided into the broad classes of small organic molecules (e.g., atorvastatin , fluticasone , clopidogrel ) and " biologics " ( infliximab , erythropoietin , insulin glargine ),

164-510: A =4), thiols (13), malonates (13), alcohols (17), aldehydes (20), nitriles (25), esters (25), then amines (35). Amines are very basic, and are great nucleophiles/attackers. The aliphatic hydrocarbons are subdivided into three groups of homologous series according to their state of saturation : The rest of the group is classified according to the functional groups present. Such compounds can be "straight-chain", branched-chain or cyclic. The degree of branching affects characteristics, such as

246-722: A molar mass less than approximately 1000 g/mol. Fullerenes and carbon nanotubes , carbon compounds with spheroidal and tubular structures, have stimulated much research into the related field of materials science . The first fullerene was discovered in 1985 by Sir Harold W. Kroto of the United Kingdom and by Richard E. Smalley and Robert F. Curl Jr., of the United States. Using a laser to vaporize graphite rods in an atmosphere of helium gas, these chemists and their assistants obtained cagelike molecules composed of 60 carbon atoms (C60) joined by single and double bonds to form

328-621: A public health intervention). Establishment of the efficacy of an intervention is often done relative to other available interventions, with which it will be compared. Specifically, efficacy refers to "whether a drug demonstrates a health benefit over a placebo or other intervention when tested in an ideal situation, such as a tightly controlled clinical trial." These studies focus on a primary parameter to be shown statistically different between placebo and intervention groups. Comparisons of this type are called 'explanatory' randomized controlled trials , whereas 'pragmatic' trials are used to establish

410-546: A branch of organic chemistry. Although the history of biochemistry might be taken to span some four centuries, fundamental understanding of the field only began to develop in the late 19th century and the actual term biochemistry was coined around the start of 20th century. Research in the field increased throughout the twentieth century, without any indication of slackening in the rate of increase, as may be verified by inspection of abstraction and indexing services such as BIOSIS Previews and Biological Abstracts , which began in

492-423: A broad range of industrial and commercial products including, among (many) others: plastics , synthetic rubber , organic adhesives , and various property-modifying petroleum additives and catalysts . The majority of chemical compounds occurring in biological organisms are carbon compounds, so the association between organic chemistry and biochemistry is so close that biochemistry might be regarded as in essence

574-510: A carbon lattice, and that the detailed patterns of atomic bonding could be discerned by skillful interpretations of appropriate chemical reactions. The era of the pharmaceutical industry began in the last decade of the 19th century when the German company, Bayer , first manufactured acetylsalicylic acid—more commonly known as aspirin . By 1910 Paul Ehrlich and his laboratory group began developing arsenic-based arsphenamine , (Salvarsan), as

656-415: A class of hydrocarbons called biopolymer polyisoprenoids present in the latex of various species of plants, which is the basis for making rubber . Biologists usually classify the above-mentioned biomolecules into four main groups, i.e., proteins, lipids, carbohydrates, and nucleic acids. Petroleum and its derivatives are considered organic molecules, which is consistent with the fact that this oil comes from

738-462: A combination of luck and preparation for unexpected observations. The latter half of the 19th century however witnessed systematic studies of organic compounds. The development of synthetic indigo is illustrative. The production of indigo from plant sources dropped from 19,000 tons in 1897 to 1,000 tons by 1914 thanks to the synthetic methods developed by Adolf von Baeyer . In 2002, 17,000 tons of synthetic indigo were produced from petrochemicals . In

820-419: A common reaction is a substitution reaction written as: where X is some functional group and Nu is a nucleophile . The number of possible organic reactions is infinite. However, certain general patterns are observed that can be used to describe many common or useful reactions. Each reaction has a stepwise reaction mechanism that explains how it happens in sequence—although the detailed description of steps

902-453: A drug is commonly referred to as a receptor , but can in general be any chemically sensitive site on any molecule found in the body. The nature of such binding can be quantified by characterising how tightly these molecules, the drug and its receptor, interact: this is known as the affinity . Efficacy, on the other hand, is a measure of the action of a drug once binding has occurred. The maximum response, E max , will be reduced if efficacy

SECTION 10

#1732787624859

984-576: A hollow sphere with 12 pentagonal and 20 hexagonal faces—a design that resembles a football, or soccer ball. In 1996 the trio was awarded the Nobel Prize for their pioneering efforts. The C60 molecule was named buckminsterfullerene (or, more simply, the buckyball) after the American architect R. Buckminster Fuller, whose geodesic dome is constructed on the same structural principles. Organic compounds containing bonds of carbon to nitrogen, oxygen and

1066-576: A lead compound in suitable quantity and quality to allow large scale animal testing, and then human clinical trials . This involves the optimization of the synthetic route for bulk industrial production, and discovery of the most suitable drug formulation . The former of these is still the bailiwick of medicinal chemistry, the latter brings in the specialization of formulation science (with its components of physical and polymer chemistry and materials science). The synthetic chemistry specialization in medicinal chemistry aimed at adaptation and optimization of

1148-427: A lower p K a on another molecule (intermolecular) or within the same molecule (intramolecular). Any group with a net acidic p K a that gets within range, such as an acyl or carbonyl group is fair game. Since the likelihood of being attacked decreases with an increase in p K a , acyl chloride components with the lowest measured p K a values are most likely to be attacked, followed by carboxylic acids (p K

1230-484: A melting point, boiling point, solubility, and index of refraction. Qualitative properties include odor, consistency, and color. Organic compounds typically melt and many boil. In contrast, while inorganic materials generally can be melted, many do not boil, and instead tend to degrade. In earlier times, the melting point (m.p.) and boiling point (b.p.) provided crucial information on the purity and identity of organic compounds. The melting and boiling points correlate with

1312-475: A novel compound is a problem-solving task, where a synthesis is designed for a target molecule by selecting optimal reactions from optimal starting materials. Complex compounds can have tens of reaction steps that sequentially build the desired molecule. The synthesis proceeds by utilizing the reactivity of the functional groups in the molecule. For example, a carbonyl compound can be used as a nucleophile by converting it into an enolate , or as an electrophile ;

1394-512: A number of approaches toward the identification and development of hits exist, the most successful techniques are based on chemical and biological intuition developed in team environments through years of rigorous practice aimed solely at discovering new therapeutic agents. Further chemistry and analysis is necessary, first to identify the "triage" compounds that do not provide series displaying suitable SAR and chemical characteristics associated with long-term potential for development, then to improve

1476-552: A respectfully natural environment, or without human intervention. Biomolecular chemistry is a major category within organic chemistry which is frequently studied by biochemists . Many complex multi-functional group molecules are important in living organisms. Some are long-chain biopolymers , and these include peptides , DNA , RNA and the polysaccharides such as starches in animals and celluloses in plants. The other main classes are amino acids (monomer building blocks of peptides and proteins), carbohydrates (which includes

1558-467: A strong background in organic chemistry, which must eventually be coupled with a broad understanding of biological concepts related to cellular drug targets. Scientists in medicinal chemistry work are principally industrial scientists (but see following), working as part of an interdisciplinary team that uses their chemistry abilities, especially, their synthetic abilities, to use chemical principles to design effective therapeutic agents. The length of training

1640-686: A variety of chemical tests, called "wet methods", but such tests have been largely displaced by spectroscopic or other computer-intensive methods of analysis. Listed in approximate order of utility, the chief analytical methods are: Traditional spectroscopic methods such as infrared spectroscopy , optical rotation , and UV/VIS spectroscopy provide relatively nonspecific structural information but remain in use for specific applications. Refractive index and density can also be important for substance identification. The physical properties of organic compounds typically of interest include both quantitative and qualitative features. Quantitative information includes

1722-514: A wide range of biochemical compounds such as alkaloids , vitamins, steroids, and nucleic acids (e.g. DNA, RNA). Rings can fuse with other rings on an edge to give polycyclic compounds . The purine nucleoside bases are notable polycyclic aromatic heterocycles. Rings can also fuse on a "corner" such that one atom (almost always carbon) has two bonds going to one ring and two to another. Such compounds are termed spiro and are important in several natural products . One important property of carbon

SECTION 20

#1732787624859

1804-420: Is conferred by the presence of 4n + 2 delocalized pi electrons, where n is an integer. Particular instability ( antiaromaticity ) is conferred by the presence of 4n conjugated pi electrons. The characteristics of the cyclic hydrocarbons are again altered if heteroatoms are present, which can exist as either substituents attached externally to the ring (exocyclic) or as a member of the ring itself (endocyclic). In

1886-731: Is focused on quality aspects of medicines and aims to assure fitness for purpose of medicinal products. At the biological interface, medicinal chemistry combines to form a set of highly interdisciplinary sciences, setting its organic, physical , and computational emphases alongside biological areas such as biochemistry , molecular biology , pharmacognosy and pharmacology , toxicology and veterinary and human medicine ; these, with project management , statistics , and pharmaceutical business practices, systematically oversee altering identified chemical agents such that after pharmaceutical formulation , they are safe and efficacious , and therefore suitable for use in treatment of disease. Discovery

1968-467: Is intense, with practitioners often required to attain a 4-year bachelor's degree followed by a 4–6 year Ph.D. in organic chemistry. Most training regimens also include a postdoctoral fellowship period of 2 or more years after receiving a Ph.D. in chemistry, making the total length of training range from 10 to 12 years of college education. However, employment opportunities at the Master's level also exist in

2050-498: Is not a dead letter, but rather, the power of the Holy Spirit is inherent in it and that Scripture does not compel a mere intellectual assent to its doctrine, resting on logical argumentation, but rather it creates the living agreement of faith . The Smalcald Articles affirm, "in those things which concern the spoken, outward Word , we must firmly hold that God grants His Spirit or grace to no one, except through or with

2132-480: Is not always clear from a list of reactants alone. The stepwise course of any given reaction mechanism can be represented using arrow pushing techniques in which curved arrows are used to track the movement of electrons as starting materials transition through intermediates to final products. Synthetic organic chemistry is an applied science as it borders engineering , the "design, analysis, and/or construction of works for practical purposes". Organic synthesis of

2214-452: Is often performed through computational methods prior to actual synthesis of the ligand(s). This is done for a number of reasons, including but not limited to: time and financial considerations (expenditure, etc.). Once the ligand of interest has been synthesized in the laboratory, analysis is then performed by traditional methods (TLC, NMR, GC/MS, and others). Medicinal chemistry is by nature an interdisciplinary science, and practitioners have

2296-444: Is simple and unambiguous. In this system, the endpoints and intersections of each line represent one carbon, and hydrogen atoms can either be notated explicitly or assumed to be present as implied by tetravalent carbon. By 1880 an explosion in the number of chemical compounds being discovered occurred assisted by new synthetic and analytical techniques. Grignard described the situation as "chaos le plus complet" (complete chaos) due to

2378-694: Is subject to constraints that do not apply to traditional organic synthesis . Owing to the prospect of scaling the preparation, safety is of paramount importance. The potential toxicity of reagents affects methodology. The structures of pharmaceuticals are assessed in many ways, in part as a means to predict efficacy, stability, and accessibility. Lipinski's rule of five focus on the number of hydrogen bond donors and acceptors, number of rotatable bonds, surface area, and lipophilicity. Other parameters by which medicinal chemists assess or classify their compounds are: synthetic complexity, chirality, flatness, and aromatic ring count. Structural analysis of lead compounds

2460-438: Is sufficiently low. The definition of efficacy has been object for discussion. The only way in which absolute measures of efficacy have been obtained is by single ion channel analysis of ligand gated ion channels. It is still not possible to do this for G protein-linked receptors. In the case of the glycine receptor and the nicotinic acetylcholine receptor (muscle type), it has been proposed by Sivilotti et al . that opening of

2542-451: Is systematically named (6a R ,9 R )- N , N -diethyl-7-methyl-4,6,6a,7,8,9-hexahydroindolo-[4,3- fg ] quinoline-9-carboxamide. With the increased use of computing, other naming methods have evolved that are intended to be interpreted by machines. Two popular formats are SMILES and InChI . Organic molecules are described more commonly by drawings or structural formulas , combinations of drawings and chemical symbols. The line-angle formula

Medicinal chemistry - Misplaced Pages Continue

2624-443: Is that efficacy has to be defined by at least two equilibrium constants (or, more generally, by four rate constants). The combined influences of affinity and efficacy determine how effectively a drug will produce a biological effect, a property known as potency . In medicine, efficacy is the capacity for beneficial change (or therapeutic effect ) of a given intervention (for example a drug, medical device , surgical procedure , or

2706-456: Is that it readily forms chains, or networks, that are linked by carbon-carbon (carbon-to-carbon) bonds. The linking process is called polymerization , while the chains, or networks, are called polymers . The source compound is called a monomer . Two main groups of polymers exist synthetic polymers and biopolymers . Synthetic polymers are artificially manufactured, and are commonly referred to as industrial polymers . Biopolymers occur within

2788-533: Is the identification of novel active chemical compounds, often called "hits", which are typically found by assay of compounds for a desired biological activity . Initial hits can come from repurposing existing agents toward a new pathologic processes, and from observations of biologic effects of new or existing natural products from bacteria, fungi, plants, etc. In addition, hits also routinely originate from structural observations of small molecule "fragments" bound to therapeutic targets (enzymes, receptors, etc.), where

2870-439: Is the maximum response achievable from an applied or dosed agent, for instance, a small molecule drug. Intrinsic activity is a relative term for a drug's efficacy relative to a drug with the highest observed efficacy. It is a purely descriptive term that has little or no mechanistic interpretation. In order for a drug to have an effect, it needs to bind to its target, and then to affect the function of this target. The target of

2952-413: Is typically taught at the college or university level. It is considered a very challenging course, but has also been made accessible to students. Before the 18th century, chemists generally believed that compounds obtained from living organisms were endowed with a vital force that distinguished them from inorganic compounds . According to the concept of vitalism (vital force theory), organic matter

3034-590: Is used to describe whether a pesticide is effective in controlling a pest or disease. In Protestant Theology (esp. in Lutheran but also in Calvinist doctrine) efficacy is an attribute of Scripture . The efficacy of Scripture means that it is united with the power of the Holy Spirit and with it, not only demands, but also creates the acceptance of its teaching and that this teaching produces faith and obedience . Efficacy further means that Holy Scripture

3116-476: The chemical synthesis of natural products , drugs , and polymers , and study of individual organic molecules in the laboratory and via theoretical ( in silico ) study. The range of chemicals studied in organic chemistry includes hydrocarbons (compounds containing only carbon and hydrogen ) as well as compounds based on carbon, but also containing other elements, especially oxygen , nitrogen , sulfur , phosphorus (included in many biochemicals ) and

3198-435: The cycloalkenes and the cycloalkynes do. Aromatic hydrocarbons contain conjugated double bonds. This means that every carbon atom in the ring is sp2 hybridized, allowing for added stability. The most important example is benzene , the structure of which was formulated by Kekulé who first proposed the delocalization or resonance principle for explaining its structure. For "conventional" cyclic compounds, aromaticity

3280-470: The effectiveness of an intervention regarding also non-specific parameters. Effectiveness refers to "how the drug works in a real-world situation", and is "often lower than efficacy because of interactions with other medications or health conditions of the patient, sufficient dose or duration of use not prescribed by the physician or followed by the patient, or use for an off-label condition that had not been tested." In agriculture and forestry, efficacy

3362-420: The electron affinity of key atoms, bond strengths and steric hindrance . These factors can determine the relative stability of short-lived reactive intermediates , which usually directly determine the path of the reaction. The basic reaction types are: addition reactions , elimination reactions , substitution reactions , pericyclic reactions , rearrangement reactions and redox reactions . An example of

Medicinal chemistry - Misplaced Pages Continue

3444-407: The halogens . Organometallic chemistry is the study of compounds containing carbon– metal bonds. In addition, contemporary research focuses on organic chemistry involving other organometallics including the lanthanides , but especially the transition metals zinc, copper, palladium , nickel, cobalt, titanium and chromium. Organic compounds form the basis of all earthly life and constitute

3526-541: The octane number or cetane number in petroleum chemistry. Both saturated ( alicyclic ) compounds and unsaturated compounds exist as cyclic derivatives. The most stable rings contain five or six carbon atoms, but large rings (macrocycles) and smaller rings are common. The smallest cycloalkane family is the three-membered cyclopropane ((CH 2 ) 3 ). Saturated cyclic compounds contain single bonds only, whereas aromatic rings have an alternating (or conjugated) double bond. Cycloalkanes do not contain multiple bonds, whereas

3608-618: The 1920s as a single annual volume, but has grown so drastically that by the end of the 20th century it was only available to the everyday user as an online electronic database . Since organic compounds often exist as mixtures , a variety of techniques have also been developed to assess purity; chromatography techniques are especially important for this application, and include HPLC and gas chromatography . Traditional methods of separation include distillation , crystallization , evaporation , magnetic separation and solvent extraction . Organic compounds were traditionally characterized by

3690-457: The U.S., do not have formal training in medicinal chemistry but receive the necessary medicinal chemistry and pharmacologic background after employment—at entry into their work in a pharmaceutical company, where the company provides its particular understanding or model of "medichem" training through active involvement in practical synthesis on therapeutic projects. (The same is somewhat true of computational medicinal chemistry specialties, but not to

3772-495: The case of the latter, the ring is termed a heterocycle . Pyridine and furan are examples of aromatic heterocycles while piperidine and tetrahydrofuran are the corresponding alicyclic heterocycles. The heteroatom of heterocyclic molecules is generally oxygen, sulfur, or nitrogen, with the latter being particularly common in biochemical systems. Heterocycles are commonly found in a wide range of products including aniline dyes and medicines. Additionally, they are prevalent in

3854-473: The combination of the two is called the aldol reaction . Designing practically useful syntheses always requires conducting the actual synthesis in the laboratory. The scientific practice of creating novel synthetic routes for complex molecules is called total synthesis . Strategies to design a synthesis include retrosynthesis , popularized by E.J. Corey , which starts with the target molecule and splices it to pieces according to known reactions. The pieces, or

3936-521: The discovery and development of new therapeutic agents. Practically speaking, it involves chemical aspects of identification, and then systematic, thorough synthetic alteration of new chemical entities to make them suitable for therapeutic use. It includes synthetic and computational aspects of the study of existing drugs and agents in development in relation to their bioactivities (biological activities and properties), i.e., understanding their structure–activity relationships (SAR). Pharmaceutical chemistry

4018-480: The early part of the 20th century, polymers and enzymes were shown to be large organic molecules, and petroleum was shown to be of biological origin. The multiple-step synthesis of complex organic compounds is called total synthesis. Total synthesis of complex natural compounds increased in complexity to glucose and terpineol . For example, cholesterol -related compounds have opened ways to synthesize complex human hormones and their modified derivatives. Since

4100-429: The first effective medicinal treatment of syphilis , and thereby initiated the medical practice of chemotherapy . Ehrlich popularized the concepts of "magic bullet" drugs and of systematically improving drug therapies. His laboratory made decisive contributions to developing antiserum for diphtheria and standardizing therapeutic serums. Early examples of organic reactions and applications were often found because of

4182-422: The fossilization of living beings, i.e., biomolecules. See also: peptide synthesis , oligonucleotide synthesis and carbohydrate synthesis . In pharmacology, an important group of organic compounds is small molecules , also referred to as 'small organic compounds'. In this context, a small molecule is a small organic compound that is biologically active but is not a polymer . In practice, small molecules have

SECTION 50

#1732787624859

4264-530: The fragments serve as starting points to develop more chemically complex forms by synthesis. Finally, hits also regularly originate from en-masse testing of chemical compounds against biological targets using biochemical or chemoproteomics assays, where the compounds may be from novel synthetic chemical libraries known to have particular properties (kinase inhibitory activity, diversity or drug-likeness, etc.), or from historic chemical compound collections or libraries created through combinatorial chemistry . While

4346-437: The functional group have an intermolecular and intramolecular effect on the surrounding environment and pH level. Different functional groups have different p K a values and bond strengths (single, double, triple) leading to increased electrophilicity with lower p K a and increased nucleophile strength with higher p K a . More basic/nucleophilic functional groups desire to attack an electrophilic functional group with

4428-494: The halogens are not normally grouped separately. Others are sometimes put into major groups within organic chemistry and discussed under titles such as organosulfur chemistry , organometallic chemistry , organophosphorus chemistry and organosilicon chemistry . Organic reactions are chemical reactions involving organic compounds . Many of these reactions are associated with functional groups. The general theory of these reactions involves careful analysis of such properties as

4510-465: The ion channel involves two steps after agonist is bound. Firstly a conformation change to a higher affinity (but still shut) form, followed by the conformation change from shut to open. It was found that partial agonism results from deficiency in the first step, and that the opening and shutting steps are essentially the same for both full and partial agonists. This has been confirmed and extended by Sine and colleagues (2009). The implication of this work

4592-451: The lack of convention it was possible to have multiple names for the same compound. This led to the creation of the Geneva rules in 1892. The concept of functional groups is central in organic chemistry, both as a means to classify structures and for predicting properties. A functional group is a molecular module, and the reactivity of that functional group is assumed, within limits, to be

4674-431: The latter of which are most often medicinal preparations of proteins (natural and recombinant antibodies , hormones etc.). Medicines can also be inorganic and organometallic compounds, commonly referred to as metallodrugs (e.g., platinum , lithium and gallium -based agents such as cisplatin , lithium carbonate and gallium nitrate , respectively). The discipline of Medicinal Inorganic Chemistry investigates

4756-710: The majority of known chemicals. The bonding patterns of carbon, with its valence of four—formal single, double, and triple bonds, plus structures with delocalized electrons —make the array of organic compounds structurally diverse, and their range of applications enormous. They form the basis of, or are constituents of, many commercial products including pharmaceuticals ; petrochemicals and agrichemicals , and products made from them including lubricants , solvents ; plastics ; fuels and explosives . The study of organic chemistry overlaps organometallic chemistry and biochemistry , but also with medicinal chemistry , polymer chemistry , and materials science . Organic chemistry

4838-436: The medicinal chemistry specialty areas associated with the design and synthesis of chemical libraries or the execution of process chemistry aimed at viable commercial syntheses (areas generally with fewer opportunities), training paths are often much more varied (e.g., including focused training in physical organic chemistry, library-related syntheses, etc.). As such, most entry-level workers in medicinal chemistry, especially in

4920-567: The molecule more acidic or basic due to their electronic influence on surrounding parts of the molecule. As the p K a (aka basicity ) of the molecular addition/functional group increases, there is a corresponding dipole , when measured, increases in strength. A dipole directed towards the functional group (higher p K a therefore basic nature of group) points towards it and decreases in strength with increasing distance. Dipole distance (measured in Angstroms ) and steric hindrance towards

5002-412: The molecule of interest. This parent name is then modified by prefixes, suffixes, and numbers to unambiguously convey the structure. Given that millions of organic compounds are known, rigorous use of systematic names can be cumbersome. Thus, IUPAC recommendations are more closely followed for simple compounds, but not complex molecules. To use the systematic naming, one must know the structures and names of

SECTION 60

#1732787624859

5084-437: The organic dye now known as Perkin's mauve . His discovery, made widely known through its financial success, greatly increased interest in organic chemistry. A crucial breakthrough for organic chemistry was the concept of chemical structure, developed independently in 1858 by both Friedrich August Kekulé and Archibald Scott Couper . Both researchers suggested that tetravalent carbon atoms could link to each other to form

5166-464: The organic solute and with the organic solvent. Various specialized properties of molecular crystals and organic polymers with conjugated systems are of interest depending on applications, e.g. thermo-mechanical and electro-mechanical such as piezoelectricity , electrical conductivity (see conductive polymers and organic semiconductors ), and electro-optical (e.g. non-linear optics ) properties. For historical reasons, such properties are mainly

5248-422: The parent structures. Parent structures include unsubstituted hydrocarbons, heterocycles, and mono functionalized derivatives thereof. Nonsystematic nomenclature is simpler and unambiguous, at least to organic chemists. Nonsystematic names do not indicate the structure of the compound. They are common for complex molecules, which include most natural products. Thus, the informally named lysergic acid diethylamide

5330-584: The pharmaceutical industry, and at that and the Ph.D. level there are further opportunities for employment in academia and government. Graduate level programs in medicinal chemistry can be found in traditional medicinal chemistry or pharmaceutical sciences departments, both of which are traditionally associated with schools of pharmacy, and in some chemistry departments. However, the majority of working medicinal chemists have graduate degrees (MS, but especially Ph.D.) in organic chemistry, rather than medicinal chemistry, and

5412-404: The physicochemical properties of the molecule that underlie necessary pharmacokinetic / pharmacodynamic (PK/PD), and toxicologic profiles (stability toward metabolic degradation, lack of geno-, hepatic, and cardiac toxicities, etc.) such that the chemical compound or biologic is suitable for introduction into animal and human studies. The final synthetic chemistry stages involve the production of

5494-769: The polarity of the molecules and their molecular weight. Some organic compounds, especially symmetrical ones, sublime . A well-known example of a sublimable organic compound is para-dichlorobenzene , the odiferous constituent of modern mothballs. Organic compounds are usually not very stable at temperatures above 300 °C, although some exceptions exist. Neutral organic compounds tend to be hydrophobic ; that is, they are less soluble in water than inorganic solvents. Exceptions include organic compounds that contain ionizable groups as well as low molecular weight alcohols , amines , and carboxylic acids where hydrogen bonding occurs. Otherwise, organic compounds tend to dissolve in organic solvents . Solubility varies widely with

5576-524: The polysaccharides), the nucleic acids (which include DNA and RNA as polymers), and the lipids . Besides, animal biochemistry contains many small molecule intermediates which assist in energy production through the Krebs cycle , and produces isoprene , the most common hydrocarbon in animals. Isoprenes in animals form the important steroid structural ( cholesterol ) and steroid hormone compounds; and in plants form terpenes , terpenoids , some alkaloids , and

5658-561: The preceding outward Word." The Formula of Concord teaches that when humans reject the calling of the Holy Spirit, it is not a result of the Word being less efficacious. Instead, contempt for the means of grace is the result of "the perverse will of man, which rejects or perverts the means and instrument of the Holy Ghost, which God offers him through the call , and resists the Holy Ghost, who wishes to be efficacious, and works through

5740-433: The preponderance of positions are in research, where the net is necessarily cast widest, and most broad synthetic activity occurs. In research of small molecule therapeutics, an emphasis on training that provides for breadth of synthetic experience and "pace" of bench operations is clearly present (e.g., for individuals with pure synthetic organic and natural products synthesis in Ph.D. and post-doctoral positions, ibid.). In

5822-442: The proposed precursors, receive the same treatment, until available and ideally inexpensive starting materials are reached. Then, the retrosynthesis is written in the opposite direction to give the synthesis. A "synthetic tree" can be constructed because each compound and also each precursor has multiple syntheses. Efficacious Efficacy is the ability to perform a task to a satisfactory or expected degree. The word comes from

5904-399: The remaining hit series concerning the desired primary activity, as well as secondary activities and physiochemical properties such that the agent will be useful when administered in real patients. In this regard, chemical modifications can improve the recognition and binding geometries ( pharmacophores ) of the candidate compounds, and so their affinities for their targets, as well as improving

5986-1003: The role of metals in medicine ( metallotherapeutics ), which involves the study and treatment of diseases and health conditions associated with inorganic metals in biological systems. There are several metallotherapeutics approved for the treatment of cancer (e.g., contain Pt, Ru, Gd, Ti, Ge, V, and Ga), antimicrobials (e.g., Ag, Cu, and Ru), diabetes (e.g., V and Cr), broad-spectrum antibiotic (e.g., Bi), bipolar disorder (e.g., Li). Other areas of study include: metallomics , genomics , proteomics , diagnostic agents (e.g., MRI: Gd, Mn; X-ray: Ba, I) and radiopharmaceuticals (e.g., Tc for diagnostics, Re for therapeutics). In particular, medicinal chemistry in its most common practice—focusing on small organic molecules—encompasses synthetic organic chemistry and aspects of natural products and computational chemistry in close combination with chemical biology , enzymology and structural biology , together aiming at

6068-559: The same degree as in synthetic areas.) Organic chemistry Organic chemistry is a subdiscipline within chemistry involving the scientific study of the structure, properties, and reactions of organic compounds and organic materials , i.e., matter in its various forms that contain carbon atoms . Study of structure determines their structural formula . Study of properties includes physical and chemical properties , and evaluation of chemical reactivity to understand their behavior. The study of organic reactions includes

6150-589: The same in a variety of molecules. Functional groups can have a decisive influence on the chemical and physical properties of organic compounds. Molecules are classified based on their functional groups. Alcohols, for example, all have the subunit C-O-H. All alcohols tend to be somewhat hydrophilic , usually form esters , and usually can be converted to the corresponding halides . Most functional groups feature heteroatoms (atoms other than C and H). Organic compounds are classified according to functional groups, alcohols, carboxylic acids, amines, etc. Functional groups make

6232-479: The same roots as effectiveness , and it has often been used synonymously, although in pharmacology a distinction is now often made between efficacy and effectiveness . The word efficacy is used in pharmacology and medicine to refer both to the maximum response achievable from a pharmaceutical drug in research settings, and to the capacity for sufficient therapeutic effect or beneficial change in clinical settings. In pharmacology, efficacy ( E max )

6314-430: The start of the 20th century, complexity of total syntheses has been increased to include molecules of high complexity such as lysergic acid and vitamin B 12 . The discovery of petroleum and the development of the petrochemical industry spurred the development of organic chemistry. Converting individual petroleum compounds into types of compounds by various chemical processes led to organic reactions enabling

6396-415: The subjects of the areas of polymer science and materials science . The names of organic compounds are either systematic, following logically from a set of rules, or nonsystematic, following various traditions. Systematic nomenclature is stipulated by specifications from IUPAC (International Union of Pure and Applied Chemistry). Systematic nomenclature starts with the name for a parent structure within

6478-457: The synthetic route for industrial scale syntheses of hundreds of kilograms or more is termed process synthesis , and involves thorough knowledge of acceptable synthetic practice in the context of large scale reactions (reaction thermodynamics, economics, safety, etc.). Critical at this stage is the transition to more stringent GMP requirements for material sourcing, handling, and chemistry. The synthetic methodology employed in medicinal chemistry

6560-509: Was cautious about claiming he had disproved vitalism, this was the first time a substance thought to be organic was synthesized in the laboratory without biological (organic) starting materials. The event is now generally accepted as indeed disproving the doctrine of vitalism. After Wöhler, Justus von Liebig worked on the organization of organic chemistry, being considered one of its principal founders. In 1856, William Henry Perkin , while trying to manufacture quinine , accidentally produced

6642-403: Was endowed with a "vital force". During the first half of the nineteenth century, some of the first systematic studies of organic compounds were reported. Around 1816 Michel Chevreul started a study of soaps made from various fats and alkalis . He separated the acids that, in combination with the alkali, produced the soap. Since these were all individual compounds, he demonstrated that it

6724-471: Was possible to make a chemical change in various fats (which traditionally come from organic sources), producing new compounds, without "vital force". In 1828 Friedrich Wöhler produced the organic chemical urea (carbamide), a constituent of urine , from inorganic starting materials (the salts potassium cyanate and ammonium sulfate ), in what is now called the Wöhler synthesis . Although Wöhler himself

#858141