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Paleobiology Database

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The Paleobiology Database (PBDB) is an online resource for information on the distribution and classification of fossil animals, plants, and microorganisms.

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69-682: The Paleobiology Database originated in the NCEAS -funded Phanerozoic Marine Paleofaunal Database initiative, which operated from August 1998 through August 2000. From 2000 to 2015, PBDB received funding from the National Science Foundation . PBDB also received support form the Australian Research Council . From 2000 to 2010 it was housed at the National Center for Ecological Analysis and Synthesis ,

138-447: A crucial experiment . If the experimental results confirm the predictions, then the hypotheses are considered more likely to be correct, but might still be wrong and continue to be subject to further testing. The experimental control is a technique for dealing with observational error. This technique uses the contrast between multiple samples, or observations, or populations, under differing conditions, to see what varies or what remains

207-410: A 1919 solar eclipse supported General Relativity rather than Newtonian gravitation . [REDACTED] Watson and Crick showed an initial (and incorrect) proposal for the structure of DNA to a team from King's College London – Rosalind Franklin , Maurice Wilkins , and Raymond Gosling . Franklin immediately spotted the flaws which concerned the water content. Later Watson saw Franklin's photo 51 ,

276-518: A controlled setting, such as a laboratory, or made on more or less inaccessible or unmanipulatable objects such as stars or human populations. The measurements often require specialized scientific instruments such as thermometers , spectroscopes , particle accelerators , or voltmeters , and the progress of a scientific field is usually intimately tied to their invention and improvement. I am not accustomed to saying anything with certainty after only one or two observations. The scientific definition of

345-602: A cross-disciplinary research center within the University of California, Santa Barbara . It is currently housed at University of Wisconsin-Madison and overseen by an international committee of major data contributors. The Paleobiology Database works closely with the Neotoma Paleoecology Database , which has a similar intellectual history, but has focused on the Quaternary (with an emphasis on

414-411: A detailed X-ray diffraction image, which showed an X-shape and was able to confirm the structure was helical. Once predictions are made, they can be sought by experiments. If the test results contradict the predictions, the hypotheses which entailed them are called into question and become less tenable. Sometimes the experiments are conducted incorrectly or are not very well designed when compared to

483-433: A drug to cure this particular disease?" This stage frequently involves finding and evaluating evidence from previous experiments, personal scientific observations or assertions, as well as the work of other scientists. If the answer is already known, a different question that builds on the evidence can be posed. When applying the scientific method to research, determining a good question can be very difficult and it will affect

552-431: A guideline for proceeding: The iterative cycle inherent in this step-by-step method goes from point 3 to 6 and back to 3 again. While this schema outlines a typical hypothesis/testing method, many philosophers, historians, and sociologists of science, including Paul Feyerabend , claim that such descriptions of scientific method have little relation to the ways that science is actually practiced. The basic elements of

621-626: A number of postdoctoral researchers and sabbatical fellows in residence at the Center at any given time. NCEAS is located in the Balboa Building of Paseo Nuevo in the center of downtown Santa Barbara . The Center offers computing infrastructure, meeting rooms for small groups and two larger rooms which accommodate 18 and 25 people, as well as access to several larger conference facilities. A large lounge and kitchen are available for breaks, informal seminars and gatherings. The Center also includes

690-403: A phenomenon under study. Albert Einstein once observed that "there is no logical bridge between phenomena and their theoretical principles." Charles Sanders Peirce , borrowing a page from Aristotle ( Prior Analytics , 2.25 ) described the incipient stages of inquiry , instigated by the "irritation of doubt" to venture a plausible guess, as abductive reasoning . The history of science

759-434: A plane from New York to Paris is an experiment that tests the aerodynamical hypotheses used for constructing the plane. These institutions thereby reduce the research function to a cost/benefit, which is expressed as money, and the time and attention of the researchers to be expended, in exchange for a report to their constituents. Current large instruments, such as CERN's Large Hadron Collider (LHC), or LIGO , or

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828-410: A predecessor idea, but perhaps more in its ability to stimulate the research that will illuminate ... bald suppositions and areas of vagueness. In general, scientists tend to look for theories that are " elegant " or " beautiful ". Scientists often use these terms to refer to a theory that is following the known facts but is nevertheless relatively simple and easy to handle. Occam's Razor serves as

897-408: A role, for instance. The history of scientific method considers changes in the methodology of scientific inquiry, not the history of science itself. The development of rules for scientific reasoning has not been straightforward; scientific method has been the subject of intense and recurring debate throughout the history of science, and eminent natural philosophers and scientists have argued for

966-519: A rule of thumb for choosing the most desirable amongst a group of equally explanatory hypotheses. To minimize the confirmation bias that results from entertaining a single hypothesis, strong inference emphasizes the need for entertaining multiple alternative hypotheses, and avoiding artifacts. [REDACTED] James D. Watson , Francis Crick , and others hypothesized that DNA had a helical structure. This implied that DNA's X-ray diffraction pattern would be 'x shaped'. This prediction followed from

1035-619: A set of phenomena. Normally, hypotheses have the form of a mathematical model . Sometimes, but not always, they can also be formulated as existential statements , stating that some particular instance of the phenomenon being studied has some characteristic and causal explanations, which have the general form of universal statements , stating that every instance of the phenomenon has a particular characteristic. Scientists are free to use whatever resources they have – their own creativity, ideas from other fields, inductive reasoning , Bayesian inference , and so on – to imagine possible explanations for

1104-530: A skeptic Francisco Sanches , by idealists as well as empiricists John Locke , George Berkeley , and David Hume . C. S. Peirce formulated the hypothetico-deductive model in the 20th century, and the model has undergone significant revision since. The term "scientific method" emerged in the 19th century, as a result of significant institutional development of science, and terminologies establishing clear boundaries between science and non-science, such as "scientist" and "pseudoscience", appearing. Throughout

1173-584: A term sometimes differs substantially from its natural language usage. For example, mass and weight overlap in meaning in common discourse, but have distinct meanings in mechanics . Scientific quantities are often characterized by their units of measure which can later be described in terms of conventional physical units when communicating the work. New theories are sometimes developed after realizing certain terms have not previously been sufficiently clearly defined. For example, Albert Einstein 's first paper on relativity begins by defining simultaneity and

1242-528: A variety of offices that house resident and visiting researchers and in-house staff. 34°25′09″N 119°41′58″W  /  34.41920°N 119.69937°W  / 34.41920; -119.69937 Scientific method The scientific method is an empirical method for acquiring knowledge that has been referred to while doing science since at least the 17th century. The scientific method involves careful observation coupled with rigorous scepticism , because cognitive assumptions can distort

1311-539: Is Kids Do Ecology, which engages elementary-age children in the science of ecology. The program consists of two parts: a bilingual website and classroom projects, in which NCEAS scientists work with students in local classrooms to carry out ecological experiments based on the scientific method . The origin of the center can be traced to the perception among ecologists that important research themes span wide regions and long time periods. For example, research on marine fisheries must consider information from wide stretches of

1380-429: Is conducted. This mission includes 3 goals: Research at NCEAS focuses on three key areas: Core Ecology, Ecoinformatics, and Conservation and Resource Management. NCEAS supports four main research activities focused on synthesizing existing data: NCEAS research is funded primarily through a competitive review process. Whether collaborative groups or individuals, scientists submit a proposal with research objectives, and

1449-399: Is essential that the outcome of testing such a prediction be currently unknown. Only in this case does a successful outcome increase the probability that the hypothesis is true. If the outcome is already known, it is called a consequence and should have already been considered while formulating the hypothesis . If the predictions are not accessible by observation or experience, the hypothesis

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1518-424: Is filled with stories of scientists claiming a "flash of inspiration", or a hunch, which then motivated them to look for evidence to support or refute their idea. Michael Polanyi made such creativity the centerpiece of his discussion of methodology. William Glen observes that the success of a hypothesis, or its service to science, lies not simply in its perceived "truth", or power to displace, subsume or reduce

1587-417: Is not yet testable and so will remain to that extent unscientific in a strict sense. A new technology or theory might make the necessary experiments feasible. For example, while a hypothesis on the existence of other intelligent species may be convincing with scientifically based speculation, no known experiment can test this hypothesis. Therefore, science itself can have little to say about the possibility. In

1656-461: Is the process by which science is carried out. As in other areas of inquiry, science (through the scientific method) can build on previous knowledge, and unify understanding of its studied topics over time. This model can be seen to underlie the scientific revolution . The overall process involves making conjectures ( hypotheses ), predicting their logical consequences, then carrying out experiments based on those predictions to determine whether

1725-615: The Canadian Institute of Ecology and Evolution . In all, more than 18 centers have been modeled on the NCEAS approach. Additional support, in particular funds directed toward the Conservation and Resource Management program, comes from federal and state agencies , private foundations , and non-governmental organizations . William W. Murdoch initially served as the NCEAS director, followed by O.J. Reichman who directed

1794-717: The National Ignition Facility (NIF), or the International Space Station (ISS), or the James Webb Space Telescope (JWST), entail expected costs of billions of dollars, and timeframes extending over decades. These kinds of institutions affect public policy, on a national or even international basis, and the researchers would require shared access to such machines and their adjunct infrastructure . Scientists assume an attitude of openness and accountability on

1863-415: The visual system , rather than to study free will , for example. His cautionary example was the gene; the gene was much more poorly understood before Watson and Crick's pioneering discovery of the structure of DNA; it would have been counterproductive to spend much time on the definition of the gene, before them. [REDACTED] Linus Pauling proposed that DNA might be a triple helix . This hypothesis

1932-589: The "scientific method" and in doing so largely replaced the notion of science as a homogeneous and universal method with that of it being a heterogeneous and local practice. In particular, Paul Feyerabend, in the 1975 first edition of his book Against Method , argued against there being any universal rules of science ; Karl Popper , and Gauch 2003, disagree with Feyerabend's claim. Later stances include physicist Lee Smolin 's 2013 essay "There Is No Scientific Method", in which he espouses two ethical principles , and historian of science Daniel Thurs' chapter in

2001-449: The 1830s and 1850s, when Baconianism was popular, naturalists like William Whewell, John Herschel and John Stuart Mill engaged in debates over "induction" and "facts" and were focused on how to generate knowledge. In the late 19th and early 20th centuries, a debate over realism vs. antirealism was conducted as powerful scientific theories extended beyond the realm of the observable. The term "scientific method" came into popular use in

2070-425: The 2015 book Newton's Apple and Other Myths about Science , which concluded that the scientific method is a myth or, at best, an idealization. As myths are beliefs, they are subject to the narrative fallacy as Taleb points out. Philosophers Robert Nola and Howard Sankey, in their 2007 book Theories of Scientific Method , said that debates over the scientific method continue, and argued that Feyerabend, despite

2139-429: The Center has hosted over 5,000 individuals and supported roughly 500 research projects, which have resulted in more than 2,000 publications in 300+ different journals. In addition, NCEAS engages graduate students and grade school children through a variety of outreach and education programs. NCEAS’ core mission is to foster synthesis and analysis, and promote effective collaboration among researchers to alter how science

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2208-546: The Earth, while controlled experiments can be seen in the works of al-Battani (853–929 CE) and Alhazen (965–1039 CE). [REDACTED] Watson and Crick then produced their model, using this information along with the previously known information about DNA's composition, especially Chargaff's rules of base pairing. After considerable fruitless experimentation, being discouraged by their superior from continuing, and numerous false starts, Watson and Crick were able to infer

2277-696: The NCEAS Science Advisory Board determines which merit support. In addition to its research activities, NCEAS carries out a number of outreach initiatives to increase public understanding of science, to foster interest in ecology and technology professions (particularly among groups underrepresented in science) and to engage with the local community. NCEAS also offers education and training programs at all levels of sophistication, from elementary school through undergraduate and graduate studies, to continuing education of professional scientists. One notable outreach and education program at NCEAS

2346-561: The PBDB are exaggerated due to uncritical inclusion of mistaken data. NCEAS The National Center for Ecological Analysis and Synthesis (NCEAS) is a research center at the University of California, Santa Barbara , in Santa Barbara , California . Better known by its acronym, NCEAS (pronounced “n-seas”) opened in May 1995. Funding for NCEAS is diverse and includes supporters such as

2415-668: The U.S. National Science Foundation , the State of California , and the University of California, Santa Barbara . NCEAS supports cross-disciplinary research that analyzes and synthesizes existing data to address major fundamental issues in ecology and allied fields, and encourages the application of science to natural resource management and public policy decision making. To facilitate synthetic analysis, NCEAS advances new techniques in mathematical and geospatial modeling, dynamic simulation , and visualization of ecological systems through its Ecoinformatics program. Since its inception,

2484-446: The basic method used for scientific inquiry. The scientific community and philosophers of science generally agree on the following classification of method components. These methodological elements and organization of procedures tend to be more characteristic of experimental sciences than social sciences . Nonetheless, the cycle of formulating hypotheses, testing and analyzing the results, and formulating new hypotheses, will resemble

2553-640: The center from 1997 to 2007. Murdoch then returned to NCEAS as interim director until the arrival of Ed McCauley on January 1, 2010. On May 11, 2011, it was announced that McCauley had been appointed vice president (research) at the University of Calgary , effective July 1, 2011, and he was replaced by Frank Davis at that time. Davis, who formerly served as NCEAS' Deputy Director from 1995-1999, served as NCEAS' Director through June 2016. Ben Halpern took over as director of NCEAS, effective July 1, 2016. NCEAS employs approximately 20 full- and part-time staff, as well as graduate and undergraduate interns. There are also

2622-467: The contrary, if the astronomically massive, the feather-light, and the extremely fast are removed from Einstein's theories – all phenomena Newton could not have observed – Newton's equations are what remain. Einstein's theories are expansions and refinements of Newton's theories and, thus, increase confidence in Newton's work. An iterative, pragmatic scheme of the four points above is sometimes offered as

2691-553: The cycle described below. The scientific method is an iterative, cyclical process through which information is continually revised. It is generally recognized to develop advances in knowledge through the following elements, in varying combinations or contributions: Each element of the scientific method is subject to peer review for possible mistakes. These activities do not describe all that scientists do but apply mostly to experimental sciences (e.g., physics, chemistry, biology, and psychology). The elements above are often taught in

2760-557: The educational system as "the scientific method". The scientific method is not a single recipe: it requires intelligence, imagination, and creativity. In this sense, it is not a mindless set of standards and procedures to follow but is rather an ongoing cycle , constantly developing more useful, accurate, and comprehensive models and methods. For example, when Einstein developed the Special and General Theories of Relativity, he did not in any way refute or discount Newton's Principia . On

2829-402: The essential structure of DNA by concrete modeling of the physical shapes of the nucleotides which comprise it. They were guided by the bond lengths which had been deduced by Linus Pauling and by Rosalind Franklin 's X-ray diffraction images. The scientific method is iterative. At any stage, it is possible to refine its accuracy and precision , so that some consideration will lead

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2898-563: The experience with NCEAS, NSF launched a wider program of synthesis centers, including the National Evolutionary Synthesis Center (NESCent) and National Institute for Mathematical and Biological Synthesis (NIMBioS) . Similar efforts based on the NCEAS research approach have been undertaken internationally as well, such as the Australian Center for Ecological Analysis and Synthesis (ACEAS) and

2967-448: The experimental method, the hypothesis, or the definition of the subject. This manner of iteration can span decades and sometimes centuries. Published papers can be built upon. For example: By 1027, Alhazen , based on his measurements of the refraction of light, was able to deduce that outer space was less dense than air , that is: "the body of the heavens is rarer than the body of air". In 1079 Ibn Mu'adh 's Treatise On Twilight

3036-427: The furthering of empiricism by Francis Bacon and Robert Hooke , the rationalist approach described by René Descartes and inductivism , brought to particular prominence by Isaac Newton and those who followed him. Experiments were advocated by Francis Bacon , and performed by Giambattista della Porta , Johannes Kepler , and Galileo Galilei . There was particular development aided by theoretical works by

3105-468: The future, a new technique may allow for an experimental test and the speculation would then become part of accepted science. For example, Einstein's theory of general relativity makes several specific predictions about the observable structure of spacetime , such as that light bends in a gravitational field , and that the amount of bending depends in a precise way on the strength of that gravitational field. Arthur Eddington 's observations made during

3174-435: The hypothesis; otherwise, the hypothesis cannot be meaningfully tested. While the scientific method is often presented as a fixed sequence of steps, it actually represents a set of general principles. Not all steps take place in every scientific inquiry (nor to the same degree), and they are not always in the same order. Numerous discoveries have not followed the textbook model of the scientific method and chance has played

3243-453: The interpretation of the observation . Scientific inquiry includes creating a testable hypothesis through inductive reasoning , testing it through experiments and statistical analysis, and adjusting or discarding the hypothesis based on the results. Although procedures vary between fields , the underlying process is often similar. In more detail: the scientific method involves making conjectures (hypothetical explanations), predicting

3312-569: The late Pleistocene and Holocene) at timescales of decades to millennia. Together, Neotoma and the Paleobiology Database have helped launch the EarthLife Consortium , a non-profit umbrella organization to support the easy and free sharing of paleoecological and paleobiological data. Partial list of contributing researchers: Donald Prothero has asserted that for several Cenozoic mammal families , range data in

3381-425: The logical consequences of hypothesis, then carrying out experiments or empirical observations based on those predictions. A hypothesis is a conjecture based on knowledge obtained while seeking answers to the question. Hypotheses can be very specific or broad but must be falsifiable , implying that it is possible to identify a possible outcome of an experiment or observation that conflicts with predictions deduced from

3450-526: The means for determining length . These ideas were skipped over by Isaac Newton with, "I do not define time , space, place and motion , as being well known to all." Einstein's paper then demonstrates that they (viz., absolute time and length independent of motion) were approximations. Francis Crick cautions us that when characterizing a subject, however, it can be premature to define something when it remains ill-understood. In Crick's study of consciousness , he actually found it easier to study awareness in

3519-535: The mechanism of storing genetic information (i.e., genes) in DNA was unclear. Researchers in Bragg's laboratory at Cambridge University made X-ray diffraction pictures of various molecules , starting with crystals of salt , and proceeding to more complicated substances. Using clues painstakingly assembled over decades, beginning with its chemical composition, it was determined that it should be possible to characterize

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3588-623: The ocean, and studies of long-lived forest communities must span decades. Recognizing that research in such areas cannot be accomplished by a single scientist working at one location, the National Science Foundation (NSF) recognized the need for a center whose mission was to foster synthetic research using existing data. In 1994, the NSF solicited proposals to build such a center, and the University of California, Santa Barbara

3657-405: The original conjecture was correct. However, there are difficulties in a formulaic statement of method. Though the scientific method is often presented as a fixed sequence of steps, these actions are more accurately general principles. Not all steps take place in every scientific inquiry (nor to the same degree), and they are not always done in the same order. There are different ways of outlining

3726-431: The outcome of the investigation. The systematic, careful collection of measurements or counts of relevant quantities is often the critical difference between pseudo-sciences , such as alchemy, and science, such as chemistry or biology. Scientific measurements are usually tabulated, graphed, or mapped, and statistical manipulations, such as correlation and regression , performed on them. The measurements might be made in

3795-403: The part of those experimenting. Detailed record-keeping is essential, to aid in recording and reporting on the experimental results, and supports the effectiveness and integrity of the procedure. They will also assist in reproducing the experimental results, likely by others. Traces of this approach can be seen in the work of Hipparchus (190–120 BCE), when determining a value for the precession of

3864-403: The pertinent properties of the subjects, careful thought may also entail some definitions and observations ; these observations often demand careful measurements and/or counting can take the form of expansive empirical research . A scientific question can refer to the explanation of a specific observation , as in "Why is the sky blue?" but can also be open-ended, as in "How can I design

3933-588: The physical structure of DNA, and the X-ray images would be the vehicle. The scientific method depends upon increasingly sophisticated characterizations of the subjects of investigation. (The subjects can also be called unsolved problems or the unknowns .) For example, Benjamin Franklin conjectured, correctly, that St. Elmo's fire was electrical in nature , but it has taken a long series of experiments and theoretical changes to establish this. While seeking

4002-421: The primacy of various approaches to establishing scientific knowledge. Different early expressions of empiricism and the scientific method can be found throughout history, for instance with the ancient Stoics , Epicurus , Alhazen , Avicenna , Al-Biruni , Roger Bacon , and William of Ockham . In the scientific revolution of the 16th and 17th centuries some of the most important developments were

4071-424: The process at any stage. They might adopt the characterization and formulate their own hypothesis, or they might adopt the hypothesis and deduce their own predictions. Often the experiment is not done by the person who made the prediction, and the characterization is based on experiments done by someone else. Published results of experiments can also serve as a hypothesis predicting their own reproducibility. Science

4140-461: The same. We vary the conditions for the acts of measurement, to help isolate what has changed. Mill's canons can then help us figure out what the important factor is. Factor analysis is one technique for discovering the important factor in an effect. Depending on the predictions, the experiments can have different shapes. It could be a classical experiment in a laboratory setting, a double-blind study or an archaeological excavation . Even taking

4209-422: The scientific method are illustrated by the following example (which occurred from 1944 to 1953) from the discovery of the structure of DNA (marked with [REDACTED] and indented). [REDACTED] In 1950, it was known that genetic inheritance had a mathematical description, starting with the studies of Gregor Mendel , and that DNA contained genetic information (Oswald Avery's transforming principle ). But

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4278-413: The scientist to repeat an earlier part of the process. Failure to develop an interesting hypothesis may lead a scientist to re-define the subject under consideration. Failure of a hypothesis to produce interesting and testable predictions may lead to reconsideration of the hypothesis or of the definition of the subject. Failure of an experiment to produce interesting results may lead a scientist to reconsider

4347-411: The specific pairing we have postulated immediately suggests a possible copying mechanism for the genetic material". Any useful hypothesis will enable predictions , by reasoning including deductive reasoning . It might predict the outcome of an experiment in a laboratory setting or the observation of a phenomenon in nature. The prediction can also be statistical and deal only with probabilities. It

4416-582: The title of Against Method , accepted certain rules of method and attempted to justify those rules with a meta methodology. Staddon (2017) argues it is a mistake to try following rules in the absence of an algorithmic scientific method; in that case, "science is best understood through examples". But algorithmic methods, such as disproof of existing theory by experiment have been used since Alhacen (1027) and his Book of Optics , and Galileo (1638) and his Two New Sciences , and The Assayer , which still stand as scientific method. The scientific method

4485-416: The twentieth century; Dewey's 1910 book , How We Think , inspired popular guidelines , appearing in dictionaries and science textbooks, although there was little consensus over its meaning. Although there was growth through the middle of the twentieth century, by the 1960s and 1970s numerous influential philosophers of science such as Thomas Kuhn and Paul Feyerabend had questioned the universality of

4554-434: The work of Cochran, Crick and Vand (and independently by Stokes). The Cochran-Crick-Vand-Stokes theorem provided a mathematical explanation for the empirical observation that diffraction from helical structures produces x-shaped patterns. In their first paper, Watson and Crick also noted that the double helix structure they proposed provided a simple mechanism for DNA replication , writing, "It has not escaped our notice that

4623-405: Was able to infer that Earth's atmosphere was 50 miles thick, based on atmospheric refraction of the sun's rays. This is why the scientific method is often represented as circular – new information leads to new characterisations, and the cycle of science continues. Measurements collected can be archived , passed onwards and used by others. Other scientists may start their own research and enter

4692-409: Was also considered by Francis Crick and James D. Watson but discarded. When Watson and Crick learned of Pauling's hypothesis, they understood from existing data that Pauling was wrong. and that Pauling would soon admit his difficulties with that structure. A hypothesis is a suggested explanation of a phenomenon, or alternately a reasoned proposal suggesting a possible correlation between or among

4761-403: Was awarded $ 10.4 million to establish and operate the center for five years. Subsequent grants were awarded to UC Santa Barbara to continue NCEAS in 2000 ($ 16.6 million) and 2006 ($ 18.5 million). By 2005, ISI Essential Science Indicators recognized that NCEAS ranked #22 out of 38,000 institutions worldwide publishing in ecology and environmental science, in terms of scientific impact. Based on

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