An organism is defined in a medical dictionary as any living thing that functions as an individual . Such a definition raises more problems than it solves, not least because the concept of an individual is also difficult. Many criteria, few of them widely accepted, have been proposed to define what an organism is. Among the most common is that an organism has autonomous reproduction , growth , and metabolism . This would exclude viruses , despite the fact that they evolve like organisms. Other problematic cases include colonial organisms ; a colony of eusocial insects is organised adaptively, and has germ-soma specialisation , with some insects reproducing, others not, like cells in an animal's body. The body of a siphonophore , a jelly-like marine animal, is composed of organism-like zooids , but the whole structure looks and functions much like an animal such as a jellyfish , the parts collaborating to provide the functions of the colonial organism.
34-711: See text Recumbirostra is a clade of tetrapods which lived during the Carboniferous and Permian periods. They are thought to have had a fossorial (burrowing) lifestyle and the group includes both short-bodied and long-bodied snake-like forms. At least one species, the long-bodied molgophid Nagini mazonense , lost its forelimbs entirely. Recumbirostra includes the families Pantylidae , Gymnarthridae , Ostodolepidae , Rhynchonkidae and Brachystelechidae , with additional families such as Microbrachidae and Molgophidae being included by some authors. Brachystelechidae and Molgophidae have also been grouped together in
68-590: A monophyletic group or natural group , is a grouping of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree . In the taxonomical literature, sometimes the Latin form cladus (plural cladi ) is used rather than the English form. Clades are the fundamental unit of cladistics , a modern approach to taxonomy adopted by most biological fields. The common ancestor may be an individual,
102-588: A population , or a species ( extinct or extant ). Clades are nested, one in another, as each branch in turn splits into smaller branches. These splits reflect evolutionary history as populations diverged and evolved independently. Clades are termed monophyletic (Greek: "one clan") groups. Over the last few decades, the cladistic approach has revolutionized biological classification and revealed surprising evolutionary relationships among organisms. Increasingly, taxonomists try to avoid naming taxa that are not clades; that is, taxa that are not monophyletic . Some of
136-479: A "ladder", with supposedly more "advanced" organisms at the top. Taxonomists have increasingly worked to make the taxonomic system reflect evolution. When it comes to naming , this principle is not always compatible with the traditional rank-based nomenclature (in which only taxa associated with a rank can be named) because not enough ranks exist to name a long series of nested clades. For these and other reasons, phylogenetic nomenclature has been developed; it
170-446: A branch of mammals that split off after the end of the period when the clade Dinosauria stopped being the dominant terrestrial vertebrates 66 million years ago. The original population and all its descendants are a clade. The rodent clade corresponds to the order Rodentia, and insects to the class Insecta. These clades include smaller clades, such as chipmunk or ant , each of which consists of even smaller clades. The clade "rodent"
204-623: A clade can be described based on two different reference points, crown age and stem age. The crown age of a clade refers to the age of the most recent common ancestor of all of the species in the clade. The stem age of a clade refers to the time that the ancestral lineage of the clade diverged from its sister clade. A clade's stem age is either the same as or older than its crown age. Ages of clades cannot be directly observed. They are inferred, either from stratigraphy of fossils , or from molecular clock estimates. Viruses , and particularly RNA viruses form clades. These are useful in tracking
238-569: A few enzymes and molecules like those in living organisms, they have no metabolism of their own; they cannot synthesize the organic compounds from which they are formed. In this sense, they are similar to inanimate matter. Viruses have their own genes , and they evolve . Thus, an argument that viruses should be classed as living organisms is their ability to undergo evolution and replicate through self-assembly. However, some scientists argue that viruses neither evolve nor self-reproduce. Instead, viruses are evolved by their host cells, meaning that there
272-398: A group could be viewed as a superorganism , optimized by group adaptation . Another view is that attributes like autonomy, genetic homogeneity and genetic uniqueness should be examined separately rather than demanding that an organism should have all of them; if so, there are multiple dimensions to biological individuality, resulting in several types of organism. A unicellular organism
306-428: A prehistoric tetrapod is a stub . You can help Misplaced Pages by expanding it . This article related to a Carboniferous animal is a stub . You can help Misplaced Pages by expanding it . This article related to a Permian animal is a stub . You can help Misplaced Pages by expanding it . Clade In biological phylogenetics , a clade (from Ancient Greek κλάδος (kládos) 'branch'), also known as
340-422: A revised taxonomy based on a concept strongly resembling clades, although the term clade itself would not be coined until 1957 by his grandson, Julian Huxley . German biologist Emil Hans Willi Hennig (1913–1976) is considered to be the founder of cladistics . He proposed a classification system that represented repeated branchings of the family tree, as opposed to the previous systems, which put organisms on
374-429: A suffix added should be e.g. "dracohortian". A clade is by definition monophyletic , meaning that it contains one ancestor which can be an organism, a population, or a species and all its descendants. The ancestor can be known or unknown; any and all members of a clade can be extant or extinct. The science that tries to reconstruct phylogenetic trees and thus discover clades is called phylogenetics or cladistics ,
SECTION 10
#1732779858320408-799: A valid grouping. An alternative clade called Tuditanomorpha is occasionally supported and includes many of the same taxa. Furthermore, the taxa that are often considered to be recumbirostrans have been found among amphibians (and not as a distinct clade) in some analyses. Below is a cladogram showing the phylogenetic relationships of recumbirostrans from Glienke (2012): Microbrachis Pantylus Stegotretus Sparodus Cardiocephalus sternbergi Cardiocephalus peabodyi Euryodus primus Euryodus dalyae Pelodosotis Micraroter Rhynchonkos Eocaecilia Tambaroter Altenglanerpeton Batropetes Carrolla Quasicaecilia [REDACTED] [REDACTED] [REDACTED] This article about
442-445: Is a microorganism such as a protist , bacterium , or archaean , composed of a single cell , which may contain functional structures called organelles . A multicellular organism such as an animal , plant , fungus , or alga is composed of many cells, often specialised. A colonial organism such as a siphonophore is a being which functions as an individual but is composed of communicating individuals. A superorganism
476-401: Is a teleonomic or goal-seeking behaviour that enables them to correct errors of many kinds so as to achieve whatever result they are designed for. Such behaviour is reminiscent of intelligent action by organisms; intelligence is seen as an embodied form of cognition . All organisms that exist today possess a self-replicating informational molecule (genome), and such an informational molecule
510-741: Is a colony, such as of ants , consisting of many individuals working together as a single functional or social unit . A mutualism is a partnership of two or more species which each provide some of the needs of the other. A lichen consists of fungi and algae or cyanobacteria , with a bacterial microbiome ; together, they are able to flourish as a kind of organism, the components having different functions, in habitats such as dry rocks where neither could grow alone. The evolutionary biologists David Queller and Joan Strassmann state that "organismality" has evolved socially, as groups of simpler units (from cells upwards) came to cooperate without conflicts. They propose that cooperation should be used as
544-535: Is an argument for viewing viruses as cellular organisms. Some researchers perceive viruses not as virions alone, which they believe are just spores of an organism, but as a virocell - an ontologically mature viral organism that has cellular structure. Such virus is a result of infection of a cell and shows all major physiological properties of other organisms: metabolism , growth, and reproduction , therefore, life in its effective presence. The philosopher Jack A. Wilson examines some boundary cases to demonstrate that
578-476: Is in turn included in the mammal, vertebrate and animal clades. The idea of a clade did not exist in pre- Darwinian Linnaean taxonomy , which was based by necessity only on internal or external morphological similarities between organisms. Many of the better known animal groups in Linnaeus's original Systema Naturae (mostly vertebrate groups) do represent clades. The phenomenon of convergent evolution
612-568: Is inadequate in biology; that the concept of individuality is problematic; and from a philosophical point of view, question whether such a definition is necessary. Problematic cases include colonial organisms : for instance, a colony of eusocial insects fulfills criteria such as adaptive organisation and germ-soma specialisation. If so, the same argument, or a criterion of high co-operation and low conflict, would include some mutualistic (e.g. lichens) and sexual partnerships (e.g. anglerfish ) as organisms. If group selection occurs, then
646-472: Is likely intrinsic to life. Thus, the earliest organisms also presumably possessed a self-replicating informational molecule ( genome ), perhaps RNA or an informational molecule more primitive than RNA. The specific nucleotide sequences in all currently extant organisms contain information that functions to promote survival, reproduction , and the ability to acquire resources necessary for reproduction, and sequences with such functions probably emerged early in
680-515: Is responsible for many cases of misleading similarities in the morphology of groups that evolved from different lineages. With the increasing realization in the first half of the 19th century that species had changed and split through the ages, classification increasingly came to be seen as branches on the evolutionary tree of life . The publication of Darwin's theory of evolution in 1859 gave this view increasing weight. In 1876 Thomas Henry Huxley , an early advocate of evolutionary theory, proposed
714-489: Is still controversial. As an example, see the full current classification of Anas platyrhynchos (the mallard duck) with 40 clades from Eukaryota down by following this Wikispecies link and clicking on "Expand". The name of a clade is conventionally a plural, where the singular refers to each member individually. A unique exception is the reptile clade Dracohors , which was made by haplology from Latin "draco" and "cohors", i.e. "the dragon cohort "; its form with
SECTION 20
#1732779858320748-642: The "defining trait" of an organism. Samuel Díaz‐Muñoz and colleagues (2016) accept Queller and Strassmann's view that organismality can be measured wholly by degrees of cooperation and of conflict. They state that this situates organisms in evolutionary time, so that organismality is context dependent. They suggest that highly integrated life forms, which are not context dependent, may evolve through context-dependent stages towards complete unification. Viruses are not typically considered to be organisms, because they are incapable of autonomous reproduction , growth , metabolism , or homeostasis . Although viruses have
782-473: The "defining trait" of an organism. This would treat many types of collaboration, including the fungus / alga partnership of different species in a lichen , or the permanent sexual partnership of an anglerfish , as an organism. The term "organism" (from the Ancient Greek ὀργανισμός , derived from órganon , meaning instrument, implement, tool, organ of sense or apprehension) first appeared in
816-437: The 2010s have recovered recumbirostrans as basal sauropsid (reptilian) amniotes instead. However, the placement of recumbirostrans as reptiles has been challenged by other authors, who have recovered them as stem-amniotes instead, and contended that the shared characters between recumbirostrans and reptiles are convergent, or the result of incorrect character encoding. Not all phylogenetic analyses recognize Recumbirostra as
850-402: The English language in the 1660s with the now-obsolete meaning of an organic structure or organization. It is related to the verb "organize". In his 1790 Critique of Judgment , Immanuel Kant defined an organism as "both an organized and a self-organizing being". Among the criteria that have been proposed for being an organism are: Other scientists think that the concept of the organism
884-678: The concept of organism is not sharply defined. In his view, sponges , lichens , siphonophores , slime moulds , and eusocial colonies such as those of ants or naked molerats , all lie in the boundary zone between being definite colonies and definite organisms (or superorganisms). Scientists and bio-engineers are experimenting with different types of synthetic organism , from chimaeras composed of cells from two or more species, cyborgs including electromechanical limbs, hybrots containing both electronic and biological elements, and other combinations of systems that have variously evolved and been designed. An evolved organism takes its form by
918-422: The evolution of life. It is also likely that survival sequences present early in the evolution of organisms included sequences that facilitate the avoidance of damage to the self-replicating molecule and promote the capability to repair such damages that do occur. Repair of some of the genome damages in these early organisms may have involved the capacity to use undamaged information from another similar genome by
952-518: The latter term coined by Ernst Mayr (1965), derived from "clade". The results of phylogenetic/cladistic analyses are tree-shaped diagrams called cladograms ; they, and all their branches, are phylogenetic hypotheses. Three methods of defining clades are featured in phylogenetic nomenclature : node-, stem-, and apomorphy-based (see Phylogenetic nomenclature§Phylogenetic definitions of clade names for detailed definitions). The relationship between clades can be described in several ways: The age of
986-501: The partially understood mechanisms of evolutionary developmental biology , in which the genome directs an elaborated series of interactions to produce successively more elaborate structures. The existence of chimaeras and hybrids demonstrates that these mechanisms are "intelligently" robust in the face of radically altered circumstances at all levels from molecular to organismal. Synthetic organisms already take diverse forms, and their diversity will increase. What they all have in common
1020-482: The relationships between organisms that the molecular biology arm of cladistics has revealed include that fungi are closer relatives to animals than they are to plants, archaea are now considered different from bacteria , and multicellular organisms may have evolved from archaea. The term "clade" is also used with a similar meaning in other fields besides biology, such as historical linguistics ; see Cladistics § In disciplines other than biology . The term "clade"
1054-698: The spread of viral infections . HIV , for example, has clades called subtypes, which vary in geographical prevalence. HIV subtype (clade) B, for example is predominant in Europe, the Americas and Japan, whereas subtype A is more common in east Africa. Organism The evolutionary biologists David Queller and Joan Strassmann state that "organismality", the qualities or attributes that define an entity as an organism, has evolved socially as groups of simpler units (from cells upwards) came to cooperate without conflicts. They propose that cooperation should be used as
Recumbirostra - Misplaced Pages Continue
1088-407: The suggested clade Chthonosauria. Recumbirostra was erected as a clade in 2007 to include many of the taxa traditionally grouped in " Microsauria ", which has since been shown to be a paraphyletic or polyphyletic grouping. Like other "microsaurs", the recumbirostrans have traditionally been considered to be members of the subclass Lepospondyli ; however, many phylogenetic analyses conducted since
1122-459: Was co-evolution of viruses and host cells. If host cells did not exist, viral evolution would be impossible. As for reproduction, viruses rely on hosts' machinery to replicate. The discovery of viruses with genes coding for energy metabolism and protein synthesis fuelled the debate about whether viruses are living organisms, but the genes have a cellular origin. Most likely, they were acquired through horizontal gene transfer from viral hosts. There
1156-423: Was coined in 1957 by the biologist Julian Huxley to refer to the result of cladogenesis , the evolutionary splitting of a parent species into two distinct species, a concept Huxley borrowed from Bernhard Rensch . Many commonly named groups – rodents and insects , for example – are clades because, in each case, the group consists of a common ancestor with all its descendant branches. Rodents, for example, are
#319680