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102-482: The first discovery of valuable mineral deposits at Iron Mountain was by Thomas Jefferson Harrison, Robert Lyon, and Stephan Alozo Meek in 1852. It became known as Pumptown later to be known as Buckeye all three partners sold their claims to Quartz Hill Gold mining company, based in Cook County Illinois , Shasta historical society During its high point over two hundred stamp mills were under production,

204-466: A futile cycle . Although fat is a common way of storing energy, in vertebrates such as humans the fatty acids in these stores cannot be converted to glucose through gluconeogenesis as these organisms cannot convert acetyl-CoA into pyruvate ; plants do, but animals do not, have the necessary enzymatic machinery. As a result, after long-term starvation, vertebrates need to produce ketone bodies from fatty acids to replace glucose in tissues such as

306-440: A DNA template from its viral RNA genome. RNA in ribozymes such as spliceosomes and ribosomes is similar to enzymes as it can catalyze chemical reactions. Individual nucleosides are made by attaching a nucleobase to a ribose sugar. These bases are heterocyclic rings containing nitrogen, classified as purines or pyrimidines . Nucleotides also act as coenzymes in metabolic-group-transfer reactions. Metabolism involves

408-591: A comprehensive assessment of the site and establishing the necessary groundwork for a successful drilling operation. Here's a breakdown of the key aspects involved: Before drilling can begin, a thorough site assessment is conducted to determine the optimal drilling locations. This assessment involves evaluating factors such as the type of material to be drilled, subsurface conditions, potential obstacles (e.g., underground utilities), and structural integrity. This information helps identify suitable areas for drilling that minimize risks and ensure accurate results. Depending on

510-423: A constant set of conditions within cells, a condition called homeostasis . Metabolic regulation also allows organisms to respond to signals and interact actively with their environments. Two closely linked concepts are important for understanding how metabolic pathways are controlled. Firstly, the regulation of an enzyme in a pathway is how its activity is increased and decreased in response to signals. Secondly,

612-429: A cycle of reactions that add the acyl group, reduce it to an alcohol, dehydrate it to an alkene group and then reduce it again to an alkane group. The enzymes of fatty acid biosynthesis are divided into two groups: in animals and fungi, all these fatty acid synthase reactions are carried out by a single multifunctional type I protein, while in plant plastids and bacteria separate type II enzymes perform each step in

714-528: A gold mine in the Witwatersrand, the orebody can be massive similar to the Olympic Dam mine , South Australia, or Cadia-Ridgeway Mine , New South Wales . The width or size of the orebody is determined by the grade as well as the distribution of the ore. The dip of the orebody also has an influence on the mining method for example a narrow horizontal vein orebody will be mined by room and pillar or

816-458: A hydrogen acceptor. Hundreds of separate types of dehydrogenases remove electrons from their substrates and reduce NAD into NADH. This reduced form of the coenzyme is then a substrate for any of the reductases in the cell that need to transfer hydrogen atoms to their substrates. Nicotinamide adenine dinucleotide exists in two related forms in the cell, NADH and NADPH. The NAD /NADH form is more important in catabolic reactions, while NADP /NADPH

918-558: A large group of compounds that contain fatty acids and glycerol ; a glycerol molecule attached to three fatty acids by ester linkages is called a triacylglyceride . Several variations of the basic structure exist, including backbones such as sphingosine in sphingomyelin , and hydrophilic groups such as phosphate in phospholipids . Steroids such as sterol are another major class of lipids. Carbohydrates are aldehydes or ketones , with many hydroxyl groups attached, that can exist as straight chains or rings. Carbohydrates are

1020-404: A larger increase in the entropy of their environments. The metabolism of a cell achieves this by coupling the spontaneous processes of catabolism to the non-spontaneous processes of anabolism. In thermodynamic terms, metabolism maintains order by creating disorder. As the environments of most organisms are constantly changing, the reactions of metabolism must be finely regulated to maintain

1122-416: A longwall method whereas a vertical narrow vein orebody will be mined by an open stoping or cut and fill method. Further consideration is needed for the strength of the ore as well as the surrounding rock. An orebody hosted in strong self-supporting rock may be mined by an open stoping method and an orebody hosted in poor rock may need to be mined by a cut and fill method where the void is continuously filled as

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1224-472: A membrane. Pumping protons out of the mitochondria creates a proton concentration difference across the membrane and generates an electrochemical gradient . This force drives protons back into the mitochondrion through the base of an enzyme called ATP synthase . The flow of protons makes the stalk subunit rotate, causing the active site of the synthase domain to change shape and phosphorylate adenosine diphosphate —turning it into ATP. Chemolithotrophy

1326-412: A reel. In shallower mines the ore is then dumped into a truck to be hauled to the surface. In deeper mines, the ore is dumped down an ore pass (a vertical or near vertical excavation) where it falls to a collection level. On the collection level, it may receive primary crushing by a jaw or cone crusher, or by a rockbreaker . The ore is then moved by conveyor belts , trucks or occasionally trains to

1428-591: A set of xenobiotic-metabolizing enzymes. In humans, these include cytochrome P450 oxidases , UDP-glucuronosyltransferases , and glutathione S -transferases . This system of enzymes acts in three stages to firstly oxidize the xenobiotic (phase I) and then conjugate water-soluble groups onto the molecule (phase II). The modified water-soluble xenobiotic can then be pumped out of cells and in multicellular organisms may be further metabolized before being excreted (phase III). In ecology , these reactions are particularly important in microbial biodegradation of pollutants and

1530-459: A short ancestral pathway, the duplication and then divergence of entire pathways as well as the recruitment of pre-existing enzymes and their assembly into a novel reaction pathway. The relative importance of these mechanisms is unclear, but genomic studies have shown that enzymes in a pathway are likely to have a shared ancestry, suggesting that many pathways have evolved in a step-by-step fashion with novel functions created from pre-existing steps in

1632-530: A source of energy, while switching between carbon fixation and the fermentation of organic compounds. In many organisms, the capture of solar energy is similar in principle to oxidative phosphorylation, as it involves the storage of energy as a proton concentration gradient. This proton motive force then drives ATP synthesis. The electrons needed to drive this electron transport chain come from light-gathering proteins called photosynthetic reaction centres . Reaction centers are classified into two types depending on

1734-419: A timeline for the core drilling project is essential for effective project management. This includes setting deadlines, scheduling equipment and personnel, and coordinating with other stakeholders involved in the project. Logistics, such as transportation of equipment and materials to the site, are also planned during this stage. Declines are often started from the side of the high wall of an open cut mine when

1836-413: A vast array of chemical reactions, but most fall under a few basic types of reactions that involve the transfer of functional groups of atoms and their bonds within molecules. This common chemistry allows cells to use a small set of metabolic intermediates to carry chemical groups between different reactions. These group-transfer intermediates are called coenzymes . Each class of group-transfer reactions

1938-419: Is oxidative stress . Here, processes including oxidative phosphorylation and the formation of disulfide bonds during protein folding produce reactive oxygen species such as hydrogen peroxide . These damaging oxidants are removed by antioxidant metabolites such as glutathione and enzymes such as catalases and peroxidases . Living organisms must obey the laws of thermodynamics , which describe

2040-571: Is a type of metabolism found in prokaryotes where energy is obtained from the oxidation of inorganic compounds . These organisms can use hydrogen , reduced sulfur compounds (such as sulfide , hydrogen sulfide and thiosulfate ), ferrous iron (Fe(II)) or ammonia as sources of reducing power and they gain energy from the oxidation of these compounds. These microbial processes are important in global biogeochemical cycles such as acetogenesis , nitrification and denitrification and are critical for soil fertility . The energy in sunlight

2142-401: Is an organic compound needed in small quantities that cannot be made in cells. In human nutrition , most vitamins function as coenzymes after modification; for example, all water-soluble vitamins are phosphorylated or are coupled to nucleotides when they are used in cells. Nicotinamide adenine dinucleotide (NAD ), a derivative of vitamin B 3 ( niacin ), is an important coenzyme that acts as

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2244-446: Is called gluconeogenesis . Gluconeogenesis converts pyruvate to glucose-6-phosphate through a series of intermediates, many of which are shared with glycolysis . However, this pathway is not simply glycolysis run in reverse, as several steps are catalyzed by non-glycolytic enzymes. This is important as it allows the formation and breakdown of glucose to be regulated separately, and prevents both pathways from running simultaneously in

2346-409: Is captured by plants , cyanobacteria , purple bacteria , green sulfur bacteria and some protists . This process is often coupled to the conversion of carbon dioxide into organic compounds, as part of photosynthesis, which is discussed below. The energy capture and carbon fixation systems can, however, operate separately in prokaryotes, as purple bacteria and green sulfur bacteria can use sunlight as

2448-405: Is carried out by a particular coenzyme, which is the substrate for a set of enzymes that produce it, and a set of enzymes that consume it. These coenzymes are therefore continuously made, consumed and then recycled. One central coenzyme is adenosine triphosphate (ATP), the energy currency of cells. This nucleotide is used to transfer chemical energy between different chemical reactions. There

2550-645: Is carried out by the enzyme RuBisCO as part of the Calvin–Benson cycle . Three types of photosynthesis occur in plants, C3 carbon fixation , C4 carbon fixation and CAM photosynthesis . These differ by the route that carbon dioxide takes to the Calvin cycle, with C3 plants fixing CO 2 directly, while C4 and CAM photosynthesis incorporate the CO 2 into other compounds first, as adaptations to deal with intense sunlight and dry conditions. In photosynthetic prokaryotes

2652-485: Is composed of a phosphate attached to a ribose or deoxyribose sugar group which is attached to a nitrogenous base . Nucleic acids are critical for the storage and use of genetic information, and its interpretation through the processes of transcription and protein biosynthesis . This information is protected by DNA repair mechanisms and propagated through DNA replication . Many viruses have an RNA genome , such as HIV , which uses reverse transcription to create

2754-443: Is further broken down into two methods, long hole and short hole. Short hole mining is similar to development mining, except that it occurs in ore. There are several different methods of long hole mining. Typically, long hole mining requires two excavations within the ore at different elevations below surface, (15 m – 30 m apart). Holes are drilled between the two excavations and loaded with explosives. The holes are blasted and

2856-477: Is its primary structure . Just as the letters of the alphabet can be combined to form an almost endless variety of words, amino acids can be linked in varying sequences to form a huge variety of proteins. Proteins are made from amino acids that have been activated by attachment to a transfer RNA molecule through an ester bond. This aminoacyl-tRNA precursor is produced in an ATP -dependent reaction carried out by an aminoacyl tRNA synthetase . This aminoacyl-tRNA

2958-635: Is likely due to their efficacy . In various diseases, such as type II diabetes , metabolic syndrome , and cancer , normal metabolism is disrupted. The metabolism of cancer cells is also different from the metabolism of normal cells, and these differences can be used to find targets for therapeutic intervention in cancer. Most of the structures that make up animals, plants and microbes are made from four basic classes of molecules : amino acids , carbohydrates , nucleic acid and lipids (often called fats ). As these molecules are vital for life, metabolic reactions either focus on making these molecules during

3060-563: Is needed, or back to glucose in the Cori cycle . An alternative route for glucose breakdown is the pentose phosphate pathway , which produces less energy but supports anabolism (biomolecule synthesis). This pathway reduces the coenzyme NADP to NADPH and produces pentose compounds such as ribose 5-phosphate for synthesis of many biomolecules such as nucleotides and aromatic amino acids . Fats are catabolized by hydrolysis to free fatty acids and glycerol. The glycerol enters glycolysis and

3162-478: Is only a small amount of ATP in cells, but as it is continuously regenerated, the human body can use about its own weight in ATP per day. ATP acts as a bridge between catabolism and anabolism . Catabolism breaks down molecules, and anabolism puts them together. Catabolic reactions generate ATP, and anabolic reactions consume it. It also serves as a carrier of phosphate groups in phosphorylation reactions. A vitamin

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3264-411: Is produced in response to rises in blood glucose levels . Binding of the hormone to insulin receptors on cells then activates a cascade of protein kinases that cause the cells to take up glucose and convert it into storage molecules such as fatty acids and glycogen . The metabolism of glycogen is controlled by activity of phosphorylase , the enzyme that breaks down glycogen, and glycogen synthase ,

3366-407: Is removed ("mucked out" or "bogged") from the stope using center articulated vehicles . These vehicles are referred to as "boggers" or LHD (Load, Haul, Dump machines) . These pieces of equipment may operate using diesel engines or electric motors , and resemble a low-profile front end loader . Electrically powered LHD utilize trailing cables which are flexible and can be extended or retracted on

3468-417: Is required in order to maintain the stability of the openings that are excavated. This support comes in two forms; local support and area support. Area ground support is used to prevent major ground failure. Holes are drilled into the back (ceiling) and walls and a long steel rod (or rock bolt ) is installed to hold the ground together. There are three categories of rock bolt, differentiated by how they engage

3570-546: Is scarce, or when cells undergo metabolic stress. Lipids are the most diverse group of biochemicals. Their main structural uses are as part of internal and external biological membranes , such as the cell membrane . Their chemical energy can also be used. Lipids contain a long, non-polar hydrocarbon chain with a small polar region containing oxygen. Lipids are usually defined as hydrophobic or amphipathic biological molecules but will dissolve in organic solvents such as ethanol , benzene or chloroform . The fats are

3672-617: Is the measure of the amount of energy consumed by all of these chemical reactions. A striking feature of metabolism is the similarity of the basic metabolic pathways among vastly different species. For example, the set of carboxylic acids that are best known as the intermediates in the citric acid cycle are present in all known organisms, being found in species as diverse as the unicellular bacterium Escherichia coli and huge multicellular organisms like elephants . These similarities in metabolic pathways are likely due to their early appearance in evolutionary history , and their retention

3774-685: Is the most acidic water naturally found on Earth; some samples collected in 1990 and 1991 have been measured to have a pH value of -3.6. Water temperatures as high as 47 °C have been measured underground. The drainage water endangers fish, including winter-run Chinook salmon , a federally listed endangered species that spawns in the Sacramento River. Salmon kills have been noted since 1899. The mine opening contains huge stalactite - stalagmite structures that span from floor to ceiling and are composed of rhomboclase and other iron sulfate minerals. The bacteria and archaea living in

3876-529: Is the set of life -sustaining chemical reactions in organisms . The three main functions of metabolism are: the conversion of the energy in food to energy available to run cellular processes; the conversion of food to building blocks of proteins , lipids , nucleic acids , and some carbohydrates ; and the elimination of metabolic wastes . These enzyme -catalyzed reactions allow organisms to grow and reproduce, maintain their structures , and respond to their environments. The word metabolism can also refer to

3978-422: Is the synthesis of carbohydrates from sunlight and carbon dioxide (CO 2 ). In plants, cyanobacteria and algae, oxygenic photosynthesis splits water, with oxygen produced as a waste product. This process uses the ATP and NADPH produced by the photosynthetic reaction centres , as described above, to convert CO 2 into glycerate 3-phosphate , which can then be converted into glucose. This carbon-fixation reaction

4080-495: Is then a substrate for the ribosome , which joins the amino acid onto the elongating protein chain, using the sequence information in a messenger RNA . Nucleotides are made from amino acids, carbon dioxide and formic acid in pathways that require large amounts of metabolic energy. Consequently, most organisms have efficient systems to salvage preformed nucleotides. Purines are synthesized as nucleosides (bases attached to ribose ). Both adenine and guanine are made from

4182-423: Is transformed through a series of steps into another chemical, each step being facilitated by a specific enzyme . Enzymes are crucial to metabolism because they allow organisms to drive desirable reactions that require energy and will not occur by themselves, by coupling them to spontaneous reactions that release energy. Enzymes act as catalysts —they allow a reaction to proceed more rapidly—and they also allow

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4284-445: Is uneconomical, the open stope is filled with backfill, which can be a cement and rock mixture, a cement and sand mixture or a cement and tailings mixture. This method is popular as the refilled stopes provide support for the adjacent stopes, allowing total extraction of economic resources. The mining method selected is determined by the size, shape, orientation and type of orebody to be mined. The orebody can be narrow vein such as

4386-429: Is used in anabolic reactions. Inorganic elements play critical roles in metabolism; some are abundant (e.g. sodium and potassium ) while others function at minute concentrations. About 99% of a human's body weight is made up of the elements carbon , nitrogen , calcium , sodium , chlorine , potassium , hydrogen , phosphorus , oxygen and sulfur . Organic compounds (proteins, lipids and carbohydrates) contain

4488-560: The DNA of the five dominant species at once, assembling the genomes afterwards. Four new species were identified in this way in 2004. In 2005, the proteins produced by these bacteria were identified; of the 2033 found proteins 572 were unique to this biofilm. In 2006, Baker identified three novel archaea, the Archaeal Richmond Mine Acidophilic Nanoorganisms . The bacteria obtain carbon from

4590-426: The bioremediation of contaminated land and oil spills. Many of these microbial reactions are shared with multicellular organisms, but due to the incredible diversity of types of microbes these organisms are able to deal with a far wider range of xenobiotics than multicellular organisms, and can degrade even persistent organic pollutants such as organochloride compounds. A related problem for aerobic organisms

4692-503: The chloroplast . These protons move back through the membrane as they drive the ATP synthase, as before. The electrons then flow through photosystem I and can then be used to reduce the coenzyme NADP . This coenzyme can enter the Calvin cycle or be recycled for further ATP generation. Anabolism is the set of constructive metabolic processes where the energy released by catabolism is used to synthesize complex molecules. In general,

4794-467: The control exerted by this enzyme is the effect that these changes in its activity have on the overall rate of the pathway (the flux through the pathway). For example, an enzyme may show large changes in activity (i.e. it is highly regulated) but if these changes have little effect on the flux of a metabolic pathway, then this enzyme is not involved in the control of the pathway. There are multiple levels of metabolic regulation. In intrinsic regulation,

4896-441: The cytoskeleton , a system of scaffolding that maintains the cell shape. Proteins are also important in cell signaling , immune responses , cell adhesion , active transport across membranes, and the cell cycle . Amino acids also contribute to cellular energy metabolism by providing a carbon source for entry into the citric acid cycle ( tricarboxylic acid cycle ), especially when a primary source of energy, such as glucose ,

4998-406: The last universal common ancestor . This universal ancestral cell was prokaryotic and probably a methanogen that had extensive amino acid, nucleotide, carbohydrate and lipid metabolism. The retention of these ancient pathways during later evolution may be the result of these reactions having been an optimal solution to their particular metabolic problems, with pathways such as glycolysis and

5100-550: The mevalonate pathway produces these compounds from acetyl-CoA, while in plants and bacteria the non-mevalonate pathway uses pyruvate and glyceraldehyde 3-phosphate as substrates. One important reaction that uses these activated isoprene donors is sterol biosynthesis . Here, the isoprene units are joined to make squalene and then folded up and formed into a set of rings to make lanosterol . Lanosterol can then be converted into other sterols such as cholesterol and ergosterol . Organisms vary in their ability to synthesize

5202-426: The regulation of the rate of a metabolic reaction, for example in response to changes in the cell's environment or to signals from other cells. The metabolic system of a particular organism determines which substances it will find nutritious and which poisonous . For example, some prokaryotes use hydrogen sulfide as a nutrient, yet this gas is poisonous to animals. The basal metabolic rate of an organism

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5304-529: The shaft to be hoisted to the surface in buckets or skips and emptied into bins beneath the surface headframe for transport to the mill. In some cases the underground primary crusher feeds an inclined conveyor belt which delivers ore via an incline shaft direct to the surface. The ore is fed down ore passes, with mining equipment accessing the ore body via a decline from the surface. Metabolism Metabolism ( / m ə ˈ t æ b ə l ɪ z ə m / , from Greek : μεταβολή metabolē , "change")

5406-407: The stomach and pancreas , and in salivary glands . The amino acids or sugars released by these extracellular enzymes are then pumped into cells by active transport proteins. Carbohydrate catabolism is the breakdown of carbohydrates into smaller units. Carbohydrates are usually taken into cells after they have been digested into monosaccharides such as glucose and fructose . Once inside,

5508-428: The 20 common amino acids. Most bacteria and plants can synthesize all twenty, but mammals can only synthesize eleven nonessential amino acids, so nine essential amino acids must be obtained from food. Some simple parasites , such as the bacteria Mycoplasma pneumoniae , lack all amino acid synthesis and take their amino acids directly from their hosts. All amino acids are synthesized from intermediates in glycolysis,

5610-544: The Keswick Reservoir formed by a dam across the Sacramento River . Historic mining activity at the site has fractured the mountain, exposing minerals in the mountain to surface water, rain water, and oxygen. When pyrite is exposed to moisture and oxygen, sulfuric acid forms. This sulfuric acid runs through the mountain and leaches out copper, cadmium, zinc, and other heavy metals. This acid flows out of

5712-664: The air's carbon dioxide and nitrogen from the air's N 2 gas. They are aerobes and obtain energy by using oxygen to oxidize ferrous iron dissolved from the iron sulfide rock; in the process they produce sulfuric acid which releases more metals from the rock. The bacteria belong to the group of acidophilic ferrous iron oxidizers . Underground mining (hard rock) Underground hard-rock mining refers to various underground mining techniques used to excavate "hard" minerals , usually those containing metals , such as ore containing gold , silver , iron , copper , zinc , nickel , tin , and lead . It also involves

5814-431: The brain that cannot metabolize fatty acids. In other organisms such as plants and bacteria, this metabolic problem is solved using the glyoxylate cycle , which bypasses the decarboxylation step in the citric acid cycle and allows the transformation of acetyl-CoA to oxaloacetate , where it can be used for the production of glucose. Other than fat, glucose is stored in most tissues, as an energy resource available within

5916-439: The cell for energy. M. tuberculosis can also grow on the lipid cholesterol as a sole source of carbon, and genes involved in the cholesterol-use pathway(s) have been validated as important during various stages of the infection lifecycle of M. tuberculosis . Amino acids are either used to synthesize proteins and other biomolecules, or oxidized to urea and carbon dioxide to produce energy. The oxidation pathway starts with

6018-441: The citric acid cycle producing their end products highly efficiently and in a minimal number of steps. The first pathways of enzyme-based metabolism may have been parts of purine nucleotide metabolism, while previous metabolic pathways were a part of the ancient RNA world . Many models have been proposed to describe the mechanisms by which novel metabolic pathways evolve. These include the sequential addition of novel enzymes to

6120-416: The citric acid cycle, or the pentose phosphate pathway. Nitrogen is provided by glutamate and glutamine . Nonessensial amino acid synthesis depends on the formation of the appropriate alpha-keto acid, which is then transaminated to form an amino acid. Amino acids are made into proteins by being joined in a chain of peptide bonds . Each different protein has a unique sequence of amino acid residues: this

6222-637: The coenzyme nicotinamide adenine dinucleotide (NAD ) into NADH. Macromolecules cannot be directly processed by cells. Macromolecules must be broken into smaller units before they can be used in cell metabolism. Different classes of enzymes are used to digest these polymers. These digestive enzymes include proteases that digest proteins into amino acids, as well as glycoside hydrolases that digest polysaccharides into simple sugars known as monosaccharides . Microbes simply secrete digestive enzymes into their surroundings, while animals only secrete these enzymes from specialized cells in their guts , including

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6324-624: The companies liabilities including the cleanup. The mine is located at 40°40′20″N 122°31′40″W  /  40.67222°N 122.52778°W  / 40.67222; -122.52778 in the Klamath Mountains of Shasta County , about 9 miles northwest of Redding . The mine area is drained by several creeks which ultimately enter the Spring Creek Reservoir , formed by the Spring Creek Dam , and finally

6426-534: The complex molecules that make up cellular structures are constructed step-by-step from smaller and simpler precursors. Anabolism involves three basic stages. First, the production of precursors such as amino acids , monosaccharides , isoprenoids and nucleotides , secondly, their activation into reactive forms using energy from ATP, and thirdly, the assembly of these precursors into complex molecules such as proteins , polysaccharides , lipids and nucleic acids . Anabolism in organisms can be different according to

6528-488: The construction of cells and tissues, or on breaking them down and using them to obtain energy, by their digestion. These biochemicals can be joined to make polymers such as DNA and proteins , essential macromolecules of life. Proteins are made of amino acids arranged in a linear chain joined by peptide bonds . Many proteins are enzymes that catalyze the chemical reactions in metabolism. Other proteins have structural or mechanical functions, such as those that form

6630-445: The electrons removed from organic molecules in areas such as the citric acid cycle are transferred to oxygen and the energy released is used to make ATP. This is done in eukaryotes by a series of proteins in the membranes of mitochondria called the electron transport chain . In prokaryotes , these proteins are found in the cell's inner membrane . These proteins use the energy from reduced molecules like NADH to pump protons across

6732-683: The end of the reaction catalyzed. Metal micronutrients are taken up into organisms by specific transporters and bind to storage proteins such as ferritin or metallothionein when not in use. Catabolism is the set of metabolic processes that break down large molecules. These include breaking down and oxidizing food molecules. The purpose of the catabolic reactions is to provide the energy and components needed by anabolic reactions which build molecules. The exact nature of these catabolic reactions differ from organism to organism, and organisms can be classified based on their sources of energy, hydrogen, and carbon (their primary nutritional groups ), as shown in

6834-469: The enzyme that makes it. These enzymes are regulated in a reciprocal fashion, with phosphorylation inhibiting glycogen synthase, but activating phosphorylase. Insulin causes glycogen synthesis by activating protein phosphatases and producing a decrease in the phosphorylation of these enzymes. The central pathways of metabolism described above, such as glycolysis and the citric acid cycle, are present in all three domains of living things and were present in

6936-650: The exchange of electrolytes between the extracellular fluid and the cell's fluid, the cytosol . Electrolytes enter and leave cells through proteins in the cell membrane called ion channels . For example, muscle contraction depends upon the movement of calcium, sodium and potassium through ion channels in the cell membrane and T-tubules . Transition metals are usually present as trace elements in organisms, with zinc and iron being most abundant of those. Metal cofactors are bound tightly to specific sites in proteins; although enzyme cofactors can be modified during catalysis, they always return to their original state by

7038-414: The fatty acids are broken down by beta oxidation to release acetyl-CoA, which then is fed into the citric acid cycle. Fatty acids release more energy upon oxidation than carbohydrates. Steroids are also broken down by some bacteria in a process similar to beta oxidation, and this breakdown process involves the release of significant amounts of acetyl-CoA, propionyl-CoA, and pyruvate, which can all be used by

7140-484: The first stage, large organic molecules, such as proteins , polysaccharides or lipids , are digested into their smaller components outside cells. Next, these smaller molecules are taken up by cells and converted to smaller molecules, usually acetyl coenzyme A (acetyl-CoA), which releases some energy. Finally, the acetyl group on acetyl-CoA is oxidized to water and carbon dioxide in the citric acid cycle and electron transport chain , releasing more energy while reducing

7242-405: The form of water-soluble messengers such as hormones and growth factors and are detected by specific receptors on the cell surface. These signals are then transmitted inside the cell by second messenger systems that often involved the phosphorylation of proteins. A very well understood example of extrinsic control is the regulation of glucose metabolism by the hormone insulin . Insulin

7344-502: The host rock. They are: Local ground support is used to prevent smaller rocks from falling from the back and ribs. Not all excavations require local ground support. Using this method, mining is planned to extract rock from the stopes without filling the voids; this allows the wall rocks to cave in to the extracted stope after all the ore has been removed. The stope is then sealed to prevent access. Where large bulk ore bodies are to be mined at great depth, or where leaving pillars of ore

7446-407: The level into the ore. There are two principal phases of underground mining: development mining and production mining. Development mining is composed of excavation almost entirely in (non-valuable) waste rock in order to gain access to the orebody. There are six steps in development mining: remove previously blasted material (muck out round), scaling (removing any unstable slabs of rock hanging from

7548-453: The location and regulations governing the site, it may be necessary to obtain permits and permissions before commencing drilling activities. This involves understanding and complying with local regulations, environmental guidelines, and any specific requirements for drilling in certain areas. Safety is paramount in any drilling operation. During the planning stage, safety protocols and measures are established to protect personnel, equipment, and

7650-529: The major route of breakdown is glycolysis , in which glucose is converted into pyruvate . This process generates the energy-conveying molecule NADH from NAD , and generates ATP from ADP for use in powering many processes within the cell. Pyruvate is an intermediate in several metabolic pathways, but the majority is converted to acetyl-CoA and fed into the citric acid cycle , which enables more ATP production by means of oxidative phosphorylation . This oxidation consumes molecular oxygen and releases water and

7752-506: The majority of the carbon and nitrogen; most of the oxygen and hydrogen is present as water. The abundant inorganic elements act as electrolytes . The most important ions are sodium , potassium , calcium , magnesium , chloride , phosphate and the organic ion bicarbonate . The maintenance of precise ion gradients across cell membranes maintains osmotic pressure and pH . Ions are also critical for nerve and muscle function, as action potentials in these tissues are produced by

7854-680: The mechanisms of carbon fixation are more diverse. Here, carbon dioxide can be fixed by the Calvin–Benson cycle, a reversed citric acid cycle, or the carboxylation of acetyl-CoA. Prokaryotic chemoautotrophs also fix CO 2 through the Calvin–Benson cycle, but use energy from inorganic compounds to drive the reaction. In carbohydrate anabolism, simple organic acids can be converted into monosaccharides such as glucose and then used to assemble polysaccharides such as starch . The generation of glucose from compounds like pyruvate , lactate , glycerol , glycerate 3-phosphate and amino acids

7956-482: The metabolic pathway self-regulates to respond to changes in the levels of substrates or products; for example, a decrease in the amount of product can increase the flux through the pathway to compensate. This type of regulation often involves allosteric regulation of the activities of multiple enzymes in the pathway. Extrinsic control involves a cell in a multicellular organism changing its metabolism in response to signals from other cells. These signals are usually in

8058-426: The mine such as Leptospirillum (bacteria) and Ferroplasma (archaea) are of interest because they can survive in this extreme environment, and because their metabolism contributes to the pollution. They form a pink biofilm several millimeters thick that floats on the surface of the hot water with a pH of 0.8. Since the bacteria cannot be isolated and cultured, scientists have performed community sequencing of

8160-512: The most abundant biological molecules, and fill numerous roles, such as the storage and transport of energy ( starch , glycogen ) and structural components ( cellulose in plants, chitin in animals). The basic carbohydrate units are called monosaccharides and include galactose , fructose , and most importantly glucose . Monosaccharides can be linked together to form polysaccharides in almost limitless ways. The two nucleic acids, DNA and RNA , are polymers of nucleotides . Each nucleotide

8262-420: The nature of photosynthetic pigment present, with most photosynthetic bacteria only having one type, while plants and cyanobacteria have two. In plants, algae, and cyanobacteria, photosystem II uses light energy to remove electrons from water, releasing oxygen as a waste product. The electrons then flow to the cytochrome b6f complex , which uses their energy to pump protons across the thylakoid membrane in

8364-481: The ore body is of a payable grade sufficient to support an underground mining operation, but the strip ratio has become too great to support open cast extraction methods. They are also often built and maintained as an emergency safety access from the underground workings and a means of moving large equipment to the workings. Levels are excavated horizontally off the decline or shaft to access the ore body. Stopes are then excavated perpendicular (or near perpendicular) to

8466-410: The ore is removed from the bottom excavation. One of the most important aspects of underground hard rock mining is ventilation . Ventilation is the primary method of clearing hazardous gases and/or dust which are created from drilling and blasting activity (e.g., silica dust, NOx), diesel equipment (e.g., diesel particulate, carbon monoxide), or to protect against gases that are naturally emanating from

8568-410: The ore is removed. Orebodies that do not cave readily are sometimes preconditioned by hydraulic fracturing , blasting, or by a combination of both. Hydraulic fracturing has been applied to preconditioning strong roof rock over coal longwall panels, and to inducing caving in both coal and hard rock mines. In mines which use rubber-tired equipment for coarse ore removal, the ore (or "muck")

8670-412: The pathway. Terpenes and isoprenoids are a large class of lipids that include the carotenoids and form the largest class of plant natural products . These compounds are made by the assembly and modification of isoprene units donated from the reactive precursors isopentenyl pyrophosphate and dimethylallyl pyrophosphate . These precursors can be made in different ways. In animals and archaea,

8772-674: The precursor nucleoside inosine monophosphate, which is synthesized using atoms from the amino acids glycine , glutamine , and aspartic acid , as well as formate transferred from the coenzyme tetrahydrofolate . Pyrimidines , on the other hand, are synthesized from the base orotate , which is formed from glutamine and aspartate. All organisms are constantly exposed to compounds that they cannot use as foods and that would be harmful if they accumulated in cells, as they have no metabolic function. These potentially damaging compounds are called xenobiotics . Xenobiotics such as synthetic drugs , natural poisons and antibiotics are detoxified by

8874-474: The release of harmful quantities of heavy metals into the Sacramento River . Approximately 70,000 people use surface water within 3 miles as their source of drinking water. The low pH level and the heavy metal contamination from the mine have caused the virtual elimination of aquatic life in sections of Slickrock Creek, Boulder Creek, and Spring Creek. The drainage water from the Iron Mountain Mine

8976-430: The removal of the amino group by a transaminase . The amino group is fed into the urea cycle , leaving a deaminated carbon skeleton in the form of a keto acid . Several of these keto acids are intermediates in the citric acid cycle, for example α- ketoglutarate formed by deamination of glutamate . The glucogenic amino acids can also be converted into glucose, through gluconeogenesis . In oxidative phosphorylation,

9078-643: The rock (e.g., radon gas). Ventilation is also used to manage underground temperatures for the workers. In deep, hot mines ventilation is used to cool the workplace; however, in very cold locations the air is heated to just above freezing before it enters the mine. Ventilation raises are typically used to transfer ventilation from surface to the workplaces, and can be modified for use as emergency escape routes. The primary sources of heat in underground hard rock mines are virgin rock temperature, machinery, auto compression, and fissure water. Other small contributing factors are human body heat and blasting. Some means of support

9180-499: The roof and sidewalls to protect workers and equipment from damage), installing support or/and reinforcement using shotcrete etceteras, drill face rock, load explosives, and blast explosives. To start the mining, the first step is to make the path to go down. The path is defined as 'Decline' as describe above. Before the start of a decline, all pre-planning of the power facility, drilling arrangement, de-watering, ventilation and, muck withdrawal facilities are required. Production mining

9282-409: The same techniques used to excavate ores of gems , such as diamonds and rubies . Soft-rock mining refers to the excavation of softer minerals, such as salt , coal , and oil sands . Accessing underground ore can be achieved via a decline (ramp), inclined vertical shaft or adit . Planning and preparation are crucial initial steps in the core drilling process. This stage involves conducting

9384-607: The seeps and portals of the mine. Much of the acidic mine drainage ultimately is channeled into the Spring Creek Reservoir by creeks surrounding the mine. The Bureau of Reclamation periodically releases the stored acid mine drainage into Keswick Reservoir. Planned releases are timed to coincide with the presence of diluting releases of water from Shasta Dam . On occasion, uncontrolled spills and excessive waste releases have occurred when Spring Creek Reservoir reached capacity. Without sufficient dilution, this results in

9486-557: The site was mined by the Mountain Copper Company, Ltd., both underground using open stope mining techniques and at the surface in the form of open pit and sidehill mining. As a result, the mountain fractured and mineral deposits were exposed to oxygen, water, and certain bacteria, resulting in acidic mine drainage. Though mining operations were discontinued in 1963, underground mine workings, waste rock dumps, piles of mine tailings, and an open mine pit still remain at

9588-475: The site. The mine was designated a Superfund site in 1983 and a water treatment plant was built in 1994. In 2000, the government reached a settlement with Aventis CropScience (now part of Bayer ), for the long-term funding of the cleanup efforts. Aventis, formerly known as Rhône-Poulenc , acquired Stauffer Chemical in 1987. Stauffer had purchased Mountain Copper Company in 1968 and in doing so took on

9690-627: The source of constructed molecules in their cells. Autotrophs such as plants can construct the complex organic molecules in their cells such as polysaccharides and proteins from simple molecules like carbon dioxide and water. Heterotrophs , on the other hand, require a source of more complex substances, such as monosaccharides and amino acids, to produce these complex molecules. Organisms can be further classified by ultimate source of their energy: photoautotrophs and photoheterotrophs obtain energy from light, whereas chemoautotrophs and chemoheterotrophs obtain energy from oxidation reactions. Photosynthesis

9792-425: The substrate can be acceptors, the polysaccharides produced can have straight or branched structures. The polysaccharides produced can have structural or metabolic functions themselves, or be transferred to lipids and proteins by the enzymes oligosaccharyltransferases . Fatty acids are made by fatty acid synthases that polymerize and then reduce acetyl-CoA units. The acyl chains in the fatty acids are extended by

9894-729: The sum of all chemical reactions that occur in living organisms, including digestion and the transportation of substances into and between different cells, in which case the above described set of reactions within the cells is called intermediary (or intermediate) metabolism. Metabolic reactions may be categorized as catabolic —the breaking down of compounds (for example, of glucose to pyruvate by cellular respiration ); or anabolic —the building up ( synthesis ) of compounds (such as proteins, carbohydrates, lipids, and nucleic acids). Usually, catabolism releases energy, and anabolism consumes energy. The chemical reactions of metabolism are organized into metabolic pathways , in which one chemical

9996-595: The surrounding environment. This includes assessing potential hazards, developing emergency response plans, and ensuring the availability of necessary safety equipment. Planning also involves determining the equipment and resources required for the core drilling operation. This includes selecting the appropriate drilling rig, drill bits, and accessories based on factors such as the material being drilled, desired core diameter, and drilling depth. Adequate resources such as water supply, drilling mud, and coolants are also considered to ensure smooth drilling operations. Establishing

10098-826: The table below. Organic molecules are used as a source of hydrogen atoms or electrons by organotrophs , while lithotrophs use inorganic substrates. Whereas phototrophs convert sunlight to chemical energy , chemotrophs depend on redox reactions that involve the transfer of electrons from reduced donor molecules such as organic molecules , hydrogen , hydrogen sulfide or ferrous ions to oxygen , nitrate or sulfate . In animals, these reactions involve complex organic molecules that are broken down to simpler molecules, such as carbon dioxide and water. Photosynthetic organisms, such as plants and cyanobacteria , use similar electron-transfer reactions to store energy absorbed from sunlight. The most common set of catabolic reactions in animals can be separated into three main stages. In

10200-407: The tissue through glycogenesis which was usually being used to maintained glucose level in blood. Polysaccharides and glycans are made by the sequential addition of monosaccharides by glycosyltransferase from a reactive sugar-phosphate donor such as uridine diphosphate glucose (UDP-Glc) to an acceptor hydroxyl group on the growing polysaccharide. As any of the hydroxyl groups on the ring of

10302-480: The transfer of heat and work . The second law of thermodynamics states that in any isolated system , the amount of entropy (disorder) cannot decrease. Although living organisms' amazing complexity appears to contradict this law, life is possible as all organisms are open systems that exchange matter and energy with their surroundings. Living systems are not in equilibrium , but instead are dissipative systems that maintain their state of high complexity by causing

10404-465: The waste product carbon dioxide. When oxygen is lacking, or when pyruvate is temporarily produced faster than it can be consumed by the citric acid cycle (as in intense muscular exertion), pyruvate is converted to lactate by the enzyme lactate dehydrogenase , a process that also oxidizes NADH back to NAD for re-use in further glycolysis, allowing energy production to continue. The lactate is later converted back to pyruvate for ATP production where energy

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