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Eastern hunter-gatherer

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Archaeogenetics is the study of ancient DNA using various molecular genetic methods and DNA resources. This form of genetic analysis can be applied to human, animal, and plant specimens. Ancient DNA can be extracted from various fossilized specimens including bones, eggshells, and artificially preserved tissues in human and animal specimens. In plants, ancient DNA can be extracted from seeds and tissue. Archaeogenetics provides us with genetic evidence of ancient population group migrations, domestication events, and plant and animal evolution. The ancient DNA cross referenced with the DNA of relative modern genetic populations allows researchers to run comparison studies that provide a more complete analysis when ancient DNA is compromised.

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103-479: In archaeogenetics , eastern hunter-gatherer (EHG) , sometimes east European hunter-gatherer or eastern European hunter-gatherer , is a distinct ancestral component that represents Mesolithic hunter-gatherers of Eastern Europe . The eastern hunter-gatherer genetic profile is mainly derived from Ancient North Eurasian (ANE) ancestry, which was introduced from Siberia , with a secondary and smaller admixture of European western hunter-gatherers (WHG). However,

206-585: A transitional Copper Age and the Bronze Age proper . He did not include the transitional period in the Bronze Age, but described it separately from the customary stone / bronze / iron system, at the Bronze Age's beginning. He did not, however, present it as a fourth age but chose to retain the tripartite system . In 1884, Gaetano Chierici , perhaps following the lead of Evans, renamed it in Italian as

309-431: A basic laboratory setup and chemicals. It is also independent of sample size, as the process can be scaled to accommodate larger or smaller quantities. Another benefit is that the process can be executed at room temperature. However, this method does contain some drawbacks. Mainly, silica-based DNA extraction can only be applied to bone and teeth samples; they cannot be used on soft tissue . While they work well with

412-545: A closely related extant species can be used to estimate the divergence time of those two species from their last common ancestor . The phylogeny of some extinct species, such as Australian marsupial wolves and American ground sloths , has been constructed by this method. Mitochondrial DNA in animals and chloroplast DNA in plants are usually used for this purpose because they have hundreds of copies per cell and thus are more easily accessible in ancient fossils. Another method to investigate relationship between two species

515-477: A date of over 300 kya. Examination of mitochondrial DNA (mtDNA), Y-chromosome DNA, and X-chromosome DNA indicate that the earliest population to leave Africa consisted of approximately 1500 males and females. It has been suggested by various studies that populations were geographically “structured” to some degree prior to the expansion out of Africa; this is suggested by the antiquity of shared mtDNA lineages. One study of 121 populations from various places throughout

618-523: A distance of about 3,000 kilometers, reaching as far as the Baltic Sea . This technological spread was much faster than the spread of agriculture itself, and mainly occurred through technology transfer between hunter-gatherer groups, rather than through the demic diffusion of agriculturalists. Archaeogenetics Archaeogenetics receives its name from the Greek word arkhaios , meaning "ancient", and

721-477: A large number of skeletons of prehistoric Eastern Europe. Thirty-seven samples were from Mesolithic and Neolithic Ukraine (9500-6000 BC). These were classified as intermediate between EHG and SHG. The males belonged exclusively to R haplotypes (particularly subclades of R1b1 and R1a ) and I haplotypes (particularly subclades of I2 ). Mitochondrial DNA belonged almost exclusively to U (particularly subclades of U5 and U4 ). A large number of individuals from

824-553: A new ancestral component, West Siberian Hunter-Gatherer (WSHG). WSHGs contained about 20% EHG ancestry, 73% ANE ancestry, and 6% East Asian ancestry. The EHG have been argued by some to represent a possible source for the Pre-Proto-Indo-European language (see also Father Tongue hypothesis ). Unlike the Yamnaya culture people (or closely related groups), which are associated with speakers of Proto-Indo-European,

927-464: A sample of Y-DNA extracted from a Pit–Comb Ware individual. This belonged to R1a15-YP172 . The four samples of mtDNA extracted constituted two samples of U5b1d1 , one sample of U5a2d , and one sample of U4a . Günther et al. (2018) analyzed 13 SHGs and found all of them to be of EHG ancestry. Generally, SHGs from western and northern Scandinavia had more EHG ancestry (ca 49%) than individuals from eastern Scandinavia (ca. 38%). The authors suggested that

1030-562: A sample, even when it is highly fragmented and of low concentration. It involves attaching a generic sequence to every single strand that generic primers can bond to, and thus all of the DNA present is amplified. This is generally more costly and time intensive than PCR but due to the difficulties involved in ancient DNA amplification it is cheaper and more efficient. One method of massive parallel sequencing , developed by Margulies et al., employs bead-based emulsion PCR and pyrosequencing , and

1133-608: A similarity in 2.18 and 1.62 bases per 10,000 respectively, suggesting Vi-80 sample was from a male individual. Other similar studies include finding of a mutation associated with dwarfism in Arabidopsis in ancient Nubian cotton , and investigation on the bitter taste perception locus in Neanderthals. Modern humans are thought to have evolved in Africa at least 200 kya (thousand years ago), with some evidence suggesting

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1236-607: A single migratory event between 60 and 70 kya. Genetic evidence shows that occupation of the Near East and Europe happened no earlier than 50 kya. Studying haplogroup U has shown separate dispersals from the Near East both into Europe and into North Africa. Much of the work done in archaeogenetics focuses on the Neolithic transition in Europe. Cavalli-Svorza's analysis of genetic-geographic patterns led him to conclude that there

1339-524: A single source. Knowledge of the use of copper was far more widespread than the metal itself. The European Battle Axe culture used stone axes modeled on copper axes, even with moulding carved in the stone. Ötzi the Iceman , who was found in the Ötztal Alps in 1991 and whose remains have been dated to about 3300 BC, was found with a Mondsee copper axe. Examples of Chalcolithic cultures in Europe include Vila Nova de São Pedro and Los Millares on

1442-402: A specimen is collected from an archaeological site, DNA can be extracted through a series of processes. One of the more common methods utilizes silica and takes advantage of polymerase chain reactions in order to collect ancient DNA from bone samples. There are several challenges that add to the difficulty when attempting to extract ancient DNA from fossils and prepare it for analysis. DNA

1545-493: A trading network for the production and consumption of readily available resources. Archaeogenetics has been used to study the domestication of animals. By analyzing genetic diversity in domesticated animal populations researchers can search for genetic markers in DNA to give valuable insight about possible traits of progenitor species. These traits are then used to help distinguish archaeological remains between wild and domesticated specimens. The genetic studies can also lead to

1648-492: A variety of different fossils, they may be less effective in fossils that are not fresh (e.g. treated fossils for museums ). Also, contamination poses a risk for all DNA replication in general, and this method may result in misleading results if applied to contaminated material. Polymerase chain reaction is a process that can amplify segments of DNA and is often used on extracted ancient DNA. It has three main steps: denaturation , annealing , and extension. Denaturation splits

1751-399: A “pioneer colonization” model of European occupation, with incorporation of foraging populations into arriving Neolithic populations. Furthermore, analysis of ancient DNA, not just extant DNA, is shedding light on some issues. For instance, comparison of neolithic and mesolithic DNA has indicated that the development of dairying preceded widespread lactose tolerance. South Asia has served as

1854-966: Is a Chalcolithic site in the eastern part of the Indian subcontinent . It is located on the south bank of Ajay River in West Bengal . Blackware , painted Koshi ware, pottery, various ornaments made of pearl and copper, various types of tools, pieces of fabric woven from Shimul cotton thread, human and various animal skeletons, burnt clay fragments have been found at the site. In March 2018, archaeologists had discovered three carts and copper artifacts including weapons dating to 1800 BC in Sanauli village of Uttar Pradesh. The artifacts belongs to Ochre Coloured Pottery culture . Andean civilizations in South America appear to have independently invented copper smelting. The term "Chalcolithic"

1957-471: Is a recent admixture of some Negrito groups with their local populations. Archaeogenetics has been used to better understand the populating of the Americas from Asia. Native American mtDNA haplogroups have been estimated to be between 15 and 20 kya, although there is some variation in these estimates. Genetic data has been used to propose various theories regarding how the Americas were colonized. Although

2060-622: Is also applied to American civilizations that already used copper and copper alloys thousands of years before Europeans immigrated. Besides cultures in the Andes and Mesoamerica, the Old Copper complex mined and fabricated copper as tools, weapons, and personal ornaments in an area centered in the upper Great Lakes region (present-day Michigan and Wisconsin ). The evidence of smelting or alloying that has been found in North America

2163-403: Is also difficult due to the lack of repeatability caused by the uniqueness of specimens. Silica-based DNA extraction is a method used as a purification step to extract DNA from archaeological bone artifacts and yield DNA that can be amplified using polymerase chain reaction (PCR) techniques. This process works by using silica as a means to bind DNA and separate it from other components of

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2266-485: Is also documented at the nearby site of Tell Maghzaliyah , which seems to be dated even earlier, and completely lacks pottery. The Timna Valley contains evidence of copper mining in 7000–5000 BC. The process of transition from Neolithic to Chalcolithic in the Middle East is characterized in archaeological stone tool assemblages by a decline in high quality raw material procurement and use. This dramatic shift

2369-674: Is by far the main component of the Yuzhny Oleny group, and is among the highest within the rest of the Eastern Hunter-Gatherers (EHG). As hunter-gatherers, the EHGs initially relied on stone tools and artifacts derived from ivory, horns or antlers. From circa 5,900 BC, they started to adopt pottery in the area of the northern Caspian Sea , or possibly from beyond the Ural. In barely three or four centuries, pottery spread over

2472-411: Is continuously being split up. While the organism is alive these splits are repaired; however, once an organism has died, the DNA will begin to deteriorate without repair. This results in samples having strands of DNA measuring around 100 base pairs in length. Contamination is another significant challenge at multiple steps throughout the process. Often other DNA, such as bacterial DNA, will be present in

2575-421: Is difficult because the bone fossilisation degrades and DNA is chemically modified, usually by bacteria and fungi in the soil. The best time to extract DNA from a fossil is when it is freshly out of the ground as it contains six times the DNA when compared to stored bones. The temperature of extraction site also affects the amount of obtainable DNA, evident by a decrease in success rate for DNA amplification if

2678-618: Is doubtful; a lead bracelet, found in level XII of Yarim Tepe I, dated to the 6th millennium BC; a small cone-shaped piece of lead, found in the "Burnt House" in TT6 at Arpachiyah , dated to the Halaf period or slightly later than the Yarim Tepe bracelet; and more. Copper smelting is also documented at this site at about the same time period (soon after 6000 BC). However, the use of lead seems to precede copper smelting. Early metallurgy

2781-555: Is especially helpful when the morphology of the fossil is ambiguous. Apart from that, species identification can also be done by finding specific genetic markers in an aDNA sequence. For example, the American indigenous population is characterized by specific mitochondrial RFLPs and deletions defined by Wallace et al. aDNA comparison study can also reveal the evolutionary relationship between two species. The number of base differences between DNA of an ancient species and that of

2884-556: Is genetic evidence that Chad-speaking descendants of Nilo-Saharan speakers migrated from Sudan to Lake Chad about 8 kya. Genetic evidence has also indicated that non-African populations made significant contributions to the African gene pool. For example, the Saharan African Beja people have high levels of Middle-Eastern as well as East African Cushitic DNA. Analysis of mtDNA shows that modern humans occupied Eurasia in

2987-592: Is native to India. Analysis of mtDNA and NRY (non-recombining region of Y chromosome) sequences have indicated that the first major dispersal out of Africa went through Saudi Arabia and the Indian coast 50–100 kya, and a second major dispersal occurred 15–50 kya north of the Himalayas. Much work has been done to discover the extent of north-to-south and south-to-north migrations within Eastern Asia. Comparing

3090-403: Is not another -lithic age. Subsequently, British scholars used either Evans's "Copper Age" or the term "Eneolithic" (or Æneolithic), a translation of Chierici's eneo-litica . After several years, a number of complaints appeared in the literature that "Eneolithic" seemed to the untrained eye to be produced from e-neolithic , "outside the Neolithic", clearly not a definitive characterization of

3193-462: Is seen throughout the region, including the Tehran Plain , Iran. Here, analysis of six archaeological sites determined a marked downward trend in not only material quality, but also in aesthetic variation in the lithic artefacts. Fazeli & Coningham use these results as evidence of the loss of craft specialisation caused by increased use of copper tools. The Tehran Plain findings illustrate

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3296-427: Is subject to some dispute and a common assumption by archaeologists is that objects were cold-worked into shape. Artifacts from some of these sites have been dated to 6500–1000 BC, making them some of the oldest Chalcolithic sites in the world. Some archaeologists find artifactual and structural evidence of casting by Hopewellian and Mississippian peoples to be demonstrated in the archaeological record. In

3399-468: Is that it requires overlapping primer pairs for ancient DNA due to the short sequences. There can also be “jumping PCR” which causes recombination during the PCR process which can make analyzing the DNA more difficult in inhomogeneous samples. DNA extracted from fossil remains is primarily sequenced using Massive parallel sequencing , which allows simultaneous amplification and sequencing of all DNA segments in

3502-728: Is through DNA hybridization . Single-stranded DNA segments of both species are allowed to form complementary pair bonding with each other. More closely related species have a more similar genetic makeup, and thus a stronger hybridization signal. Scholz et al. conducted southern blot hybridization on Neanderthal aDNA (extracted from fossil remain W-NW and Krapina). The results showed weak ancient human-Neanderthal hybridization and strong ancient human-modern human hybridization. The human-chimpanzee and neanderthal-chimpanzee hybridization are of similarly weak strength. This suggests that humans and neanderthals are not as closely related as two individuals of

3605-577: Is used over mitochondrial and chloroplast DNA because of its faster mutation rate as well as its intraspecific variation due to a higher consistency of polymorphism genetic markers . Findings in crop 'domestication genes' (traits that were specifically selected for or against) include Through the study of archaeogenetics in plant domestication, signs of the first global economy can also be uncovered. The geographical distribution of new crops highly selected in one region found in another where it would have not originally been introduced serve as evidence of

3708-634: The Copper Age and Eneolithic ) was an archaeological period characterized by the increasing use of smelted copper . It followed the Neolithic and preceded the Bronze Age . It occurred at different periods in different areas, but was absent in some parts of the world, such as Russia, where there was no well-defined Copper Age between the Stone and Bronze Ages. Stone tools were still predominantly used during this period. The Chalcolithic covers both

3811-538: The Dnieper Rapids for a period of 4,000 years. The Ukrainian samples belonged exclusively to the maternal haplogroup U , which is found in around 80% of all European hunter-gatherer samples. The people of the Pit–Comb Ware culture (PCW/CCC) of the eastern Baltic bear 65% EHG ancestry. This is in contrast to earlier hunter-gatherers in the area, who were more closely related to WHG. This was demonstrated using

3914-551: The Iberian Peninsula . Pottery of the Beaker people has been found at both sites, dating to several centuries after copper-working began there. The Beaker culture appears to have spread copper and bronze technologies in Europe, along with Indo-European languages. In Britain, copper was used between the 25th and 22nd centuries BC , but some archaeologists do not recognise a British Chalcolithic because production and use

4017-786: The Indo-European languages were initially spoken by EHGs living in Eastern Europe. Others have suggested that the Indo-European language family may have originated not in Eastern Europe, but among CHG-rich West Asian populations South of the Caucasus which later absorbed EHG-rich groups North of the Caucasus. It was noted that haplogroups may not correlate with autosomal ancestry components and historical language dispersals. The EHGs are suggested to have had mostly brown eyes and light skin, with "intermediate frequencies of

4120-639: The Iron Gates Mesolithic in the Balkans were estimated to be of 85% WHG and 15% EHG descent. The males at these sites carried exclusively R1b1a and I (mostly subclades of I2a ) haplotypes. mtDNA belonged mostly to U (particularly subclades of U5 and U4 ). People of the Cucuteni–Trypillia culture were found to harbor about 20% hunter-gatherer ancestry, which was intermediate between EHG and WHG. Narasimshan et al. (2019) coined

4223-783: The KITLG gene that controls melanocyte development and melanin synthesis, which is associated with blond hair and first found in an individual from Siberia dated to around 17,000 BP, is found in three Eastern Hunter-Gatherers from Samara, Motala and Ukraine c.  10,000 BP , suggesting that this allele originated in the Ancient North Eurasian population, before spreading to western Eurasia. Many remains of East Hunter-Gatherers dated to circa 8,100 BP (6,100 BCE) have also been excavated at Yuzhny Oleny island in Lake Onega . The Ancient North Eurasian (ANE) ancestry

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4326-549: The Stone Age despite the use of copper. Today, Copper Age , Eneolithic , and Chalcolithic are used synonymously to mean Evans's original definition of Copper Age. The emergence of metallurgy may have occurred first in the Fertile Crescent . Lead may have been the first ore that humans smelted , since it can be easily obtained by heating galena . Possible early examples of lead smelting, supported by

4429-591: The Zvejnieki burial ground , which mostly belonged to the Kunda culture and Narva culture in the eastern Baltic, were analyzed. These individuals were mostly of WHG descent in the earlier phases, but over time EHG ancestry became predominant. The Y-DNA of this site belonged almost exclusively to haplotypes of haplogroup R1b1a1a and I2a1 . The mtDNA belonged exclusively to haplogroup U (particularly subclades of U2 , U4 and U5 ). Forty individuals from three sites of

4532-517: The eneo-litica , or "bronze–stone" transition. The phrase was never intended to mean that the period was the only one in which both bronze and stone were used. The Copper Age features the use of copper, excluding bronze; moreover, stone continued to be used throughout both the Bronze Age and the Iron Age . The part -litica simply names the Stone Age as the point from which the transition began and

4635-656: The 1870s, when, on the basis of the significant number of large copper objects unearthed within the Carpathian Basin , he suggested that the previous threefold division of the Prehistoric Age – the Stone , Bronze and Iron Ages – should be further divided with the introduction of the Copper Age. In 1881, John Evans recognized that use of copper often preceded the use of bronze, and distinguished between

4738-667: The 5th millennium BC copper artifacts start to appear in East Asia, such as in the Jiangzhai and Hongshan cultures , but those metal artifacts were not widely used during this early stage. Copper manufacturing gradually appeared in the Yangshao period (5000–3000 BC). Jiangzhai is the only site where copper artifacts were found in the Banpo culture. Archaeologists have found remains of copper metallurgy in various cultures from

4841-623: The ANE lineage (represented by Malta and Afontova Gora 3), which later substantially contributed to the formation of the EHG. The formation of the EHG ancestral component is estimated to have happened 13,000–15,000 years BP. EHG associated remains belonged primarily to the human Y-chromosome haplogroups R1 , with a lower frequency of haplogroup J and Q . Their mitochondrial chromosomes belonged primarily to haplogroup U2 , U4 , U5 , as well as C1 and R1b . Geneflow from an East Asian-like source towards

4944-528: The Altai Mountains of Siberia between 17.2 and 10.1 kya, after the LGM. Analysis of both mtDNA and Y-chromosome DNA reveals evidence of “small, founding populations.” Studying haplogroups has led some scientists to conclude that a southern migration into the Americas from one small population was impossible, although separate analysis has found that such a model is feasible if such a migration happened along

5047-449: The Copper Age. Around 1900, many writers began to substitute Chalcolithic for Eneolithic, to avoid the false segmentation. The term chalcolithic is a combination of two words- Chalco+Lithic, derived from the Greek words "khalkos" meaning "copper", and "líthos" meaning "stone". But "chalcolithic" could also mislead: For readers unfamiliar with the Italian language, chalcolithic seemed to suggest another -lithic age, paradoxically part of

5150-465: The DNA into two single strands at high temperatures. Annealing involves attaching primer strands of DNA to the single strands that allow Taq polymerase to attach to the DNA. Extension occurs when Taq polymerase is added to the sample and matches base pairs to turn the two single strands into two complete double strands. This process is repeated many times, and is usually repeated a higher number of times when used with ancient DNA . Some issues with PCR

5253-541: The EHG contributed around 9.4% (4.4%–14.7%). EHGs may have mixed with "an Armenian-like Near Eastern source", which formed the Yamnaya culture, as early as the Eneolithic (5200-4000 BC). The people of the Yamnaya culture were found to be a mix of EHG and a "Near Eastern related population". During the 3rd millennium BC, the Yamnaya people embarked on a massive expansion throughout Europe , which significantly altered

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5356-520: The EHG-rich Dnieper–Donets culture people show no evidence of Caucasus Hunter-Gatherer (CHG) or Early European Farmer (EEF) ancestry. Both Dnieper-Donets males and Yamnaya males carry the same paternal haplogroups (R1b and I2a), suggesting that the CHG and EEF admixture among the Yamnaya came through EHG males mixing with EEF and CHG females. Based on this, David W. Anthony , this suggests that

5459-539: The Neolithic. Most mtDNA's were “already established” among existing Mesolithic and Paleolithic groups. Most “control-region lineages” of modern European mtDNA are traced to a founder event of reoccupying northern Europe towards the end of the Last Glacial Maximum (LGM). One study of extant European mtDNA's suggest this reoccupation occurred after the end of the LGM, although another suggests it occurred before. Analysis of haplogroups V, H, and U5 support

5562-457: The Pit–Comb Ware culture was more closely related to EHG. Northern and eastern areas of the eastern Baltic were found to be more closely related to EHG than southern areas. The study noted that EHGs, like SHGs and Baltic hunter-gatherers, carried high frequencies of the derived alleles for SLC24A5 and SLC45A2, which are codings for light skin . Mathieson et al. (2018) analyzed the genetics of

5665-543: The SHGs were a mix of WHGs who had migrated into Scandinavia from the south, and EHGs who had later migrated into Scandinavia from the northeast along the Norwegian coast. SHGs displayed higher frequences of genetic variants that cause light skin ( SLC45A2 and SLC24A5 ), and light eyes ( OCA/Herc2 ), than WHGs and EHGs. Members of the Kunda culture and Narva culture were also found to be more closely related with WHG, while

5768-645: The Second International Congress of Blood Transfusion. He founded blood group inheritance with Erich von Dungern in 1910, and contributed to it greatly throughout his life. He studied ABO blood groups . In one of his studies in 1919, Hirszfeld documented the ABO blood groups and hair color of people at the Macedonian front, leading to his discovery that the hair color and blood type had no correlation. In addition to that he observed that there

5871-524: The Y-chromosome lineages indicate that primarily males partook in these migrations. The discovery of two subbranches U2i and U2e of the U mtDNA lineage, which arose in Central Asia has “modulated” views of a large migration from Central Asia into India, as the two branches diverged 50 kya. Furthermore, U2e is found in large percentages in Europe but not India, and vice versa for U2i, implying U2i

5974-468: The blue-eye variants" and "high frequencies of the light-skin variants." An EHG from Karelia was determined by Günther (2018) to have high probabilities of being brown-eyed and dark haired, with a predicted intermediate skin tone. Another EHG from Samara was predicted to be light skinned, and was determined to have a high probability of being blue-eyed with a light hair shade, with a 75% calculated probability of being blond-haired. The rs12821256 allele of

6077-414: The chemical composition of bone and soil, and hydrology . There are three perseveration diagenetic phases. The first phase is bacterial putrefaction , which is estimated to cause a 15-fold degradation of DNA. Phase 2 is when bone chemically degrades, mostly by depurination . The third diagenetic phase occurs after the fossil is excavated and stored, in which bone DNA degradation occurs most rapidly. Once

6180-455: The coasts. Finally, archaeogenetics has been used to study the occupation of Australia and New Guinea. The Indigenous people of Australia and New Guinea are phenotypically very similar, but mtDNA has shown that this is due to convergence from living in similar conditions. Non-coding regions of mt-DNA have shown “no similarities” between the aboriginal populations of Australia and New Guinea. Furthermore, no major NRY lineages are shared between

6283-601: The continent found 14 genetic and linguistic “clusters,” suggesting an ancient geographic structure to African populations. In general, genotypic and phenotypic analysis have shown “large and subdivided throughout much of their evolutionary history.” Genetic analysis has supported archaeological hypotheses of a large-scale migrations of Bantu speakers into Southern Africa approximately 5 kya. Microsatellite DNA, single nucleotide polymorphisms (SNPs), and insertion/deletion polymorphisms (INDELS) have shown that Nilo-Saharan speaking populations originate from Sudan. Furthermore, there

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6386-410: The crude extracts of the lima bean and tufted vetch agglutinated the red blood cells from blood type A but not blood types B or O. This ultimately led to the disclosure of thousands of plants that contained these proteins. In order to examine racial differences and the distribution and migration patterns of various racial groups, Boyd systematically collected and classified blood samples from around

6489-415: The development of domestication of dogs. Genetic studies have shown that all dogs are descendants from the gray wolf, however, it is currently unknown when, where, and how many times dogs were domesticated. Some genetic studies have indicated multiple domestications while others have not. Archaeological findings help better understand this complicated past by providing solid evidence about the progression of

6592-623: The domestication of dogs. As early humans domesticated dogs the archaeological remains of buried dogs became increasingly more abundant. Not only does this provide more opportunities for archaeologists to study the remains, it also provides clues about early human culture. [REDACTED] Evolutionary biology portal [REDACTED] History portal Eneolithic West Asia (6000–3500 BC) Europe (5500–2200 BC) Central Asia (3700–1700 BC) South Asia (4300–1800 BC) China (5000–2900 BC) The Chalcolithic ( /ˈkælkoʊˌlɪθɪk/ cal-co- LI -thik ) (also called

6695-529: The early cold working (hammering) of near pure copper ores, as exhibited by the likes of North American Great Lakes Old Copper complex , from around 6,500 BC, through the later copper smelting cultures. The archaeological site of Belovode, on Rudnik mountain in Serbia , has the world's oldest securely dated evidence of copper smelting at high temperature, from c.  5,000 BC . The transition from Copper Age to Bronze Age in Europe occurred between

6798-529: The effects of the introduction of copper working technologies on the in-place systems of lithic craft specialists and raw materials. Networks of exchange and specialized processing and production that had evolved during the Neolithic seem to have collapsed by the Middle Chalcolithic ( c.  4500–3500 BC ) and been replaced by the use of local materials by a primarily household-based production of stone tools. Arsenical copper or bronze

6901-807: The existence of a few exotic black-slipped pottery items from the Indus Valley . In India, Chalcolithic culture flourished in mainly four farming communities – Ahar or Banas , Kayatha , Malwa , and Jorwe . These communities had some common traits like painted pottery and use of copper, but they had a distinct ceramic design tradition. Banas culture (2000–1600 BC) had ceramics with red, white, and black design. Kayatha culture (2450–1700 BC) had ceramics painted with brown colored design. Malwa culture (1900–1400 BC) had profusely decorated pottery with red or black colored design. Jorwe culture (1500–900 BC) had ceramics with matte surface and black-on-red design. Pandu Rajar Dhibi (2000–1600 BC)

7004-417: The extreme rarity of native lead, include: lead beads , found on Level IX of Chatal/Çatal Hüyük in central Anatolia , though they might be made of galena, cerussite , or metallic lead, and accordingly might or might not be evidence of early smelting; a lead bead, found in a GK59 group test square in the 4th level of Jarmo , dated to the 7th millennium BCE, though it is small enough that its human usage

7107-416: The fossil is found in warmer regions. A drastic change of a fossil's environment also affects DNA preservation. Since excavation causes an abrupt change in the fossil's environment, it may lead to physiochemical change in the DNA molecule. Moreover, DNA preservation is also affected by other factors such as the treatment of the unearthed fossil like (e.g. washing, brushing and sun drying), pH , irradiation ,

7210-433: The fossil process that inhibit PCR amplification. However, silica itself is also a strong PCR inhibitor , so careful measures must be taken to ensure that silica is removed from the DNA after extraction. The general process for extracting DNA using the silica-based method is outlined by the following: One of the main advantages of silica-based DNA extraction is that it is relatively quick and efficient, requiring only

7313-517: The genetic diversity of northeastern groups with southeastern groups has allowed archaeologists to conclude many of the northeast Asian groups came from the southeast. The Pan-Asian SNP (single nucleotide polymorphism) study found “a strong and highly significant correlation between haplotype diversity and latitude,” which, when coupled with demographic analysis, supports the case for a primarily south-to-north occupation of East Asia. Archaeogenetics has also been used to study hunter-gatherer populations in

7416-685: The genetic landscape of the continent. The expansion gave rise to cultures such as Corded Ware , and was possibly the source of the distribution of Indo-European languages in Europe. The people of the Mesolithic Kunda culture and the Narva culture of the eastern Baltic were a mix of WHG and EHG, showing the closest affinity with WHG. Samples from the Ukrainian Mesolithic and Neolithic were found to cluster tightly together between WHG and EHG, suggesting genetic continuity in

7519-497: The identification of ancestors for domesticated animals. The information gained from genetics studies on current populations helps guide the Archaeologist's search for documenting these ancestors. Archaeogenetics has been used to trace the domestication of pigs throughout the old world. These studies also reveal evidence about the details of early farmers. Methods of Archaeogenetics have also been used to further understand

7622-713: The late 5th and the late 3rd millennium BC . In the Ancient Near East the Copper Age covered about the same period, beginning in the late 5th millennium BC and lasting for about a millennium before it gave rise to the Early Bronze Age . A study in the journal Antiquity from 2013 reporting the discovery of a tin bronze foil from the Pločnik archaeological site dated to c.  4,650 BC , as well as 14 other artefacts from Bulgaria and Serbia dated to before 4,000 BC, showed that early tin bronze

7725-698: The late fourth to the early third millennia BC. These include the copper-smelting remains and copper artifacts of the Hongshan culture (4700–2900) and copper slag at the Yuanwozhen site. This indicates that inhabitants of the Yellow River valley had already learned how to make copper artifacts by the later Yangshao period. In the region of the Aïr Mountains , Niger, independent copper smelting developed between 3000 and 2500 BC. The process

7828-443: The major early corridor for geographical dispersal of modern humans from out-of-Africa. Based on studies of mtDNA line M, some have suggested that the first occupants of India were Austro-Asiatic speakers who entered about 45–60 kya. The Indian gene pool has contributions from earliest settlers, as well as West Asian and Central Asian populations from migrations no earlier than 8 kya. The lack of variation in mtDNA lineages compared to

7931-463: The most widely held theory suggests “three waves” of migration after the LGM through the Bering Strait, genetic data have given rise to alternative hypotheses. For example, one hypothesis proposes a migration from Siberia to South America 20–15 kya and a second migration that occurred after glacial recession. Y-chromosome data has led some to hold that there was a single migration starting from

8034-456: The new blood group antigens of the Lewis , Henshaw , Kell , and Rhesus systems, and analyzed the association of blood groups and various other diseases. He also focused on the biological significance of polymorphisms . His work provided the foundation for archaeogenetics because it facilitated the separation of genetic evidence for biological relationships between people. This genetic evidence

8137-428: The original sample. To avoid contamination it is necessary to take many precautions such as separate ventilation systems and workspaces for ancient DNA extraction work. The best samples to use are fresh fossils as uncareful washing can lead to mold growth. DNA coming from fossils also occasionally contains a compound that inhibits DNA replication. Coming to a consensus on which methods are best at mitigating challenges

8240-430: The period. Originally, the term Bronze Age meant that either copper or bronze was being used as the chief hard substance for the manufacture of tools and weapons. Ancient writers, who provided the essential cultural references for educated people during the 19th century, used the same name for both copper- and bronze-using ages. The concept of the Copper Age was put forward by Hungarian scientist Ferenc Pulszky in

8343-790: The region, such as the Ainu from Japan and Negrito groups in the Philippines. For example, the Pan-Asian SNP study found that Negrito populations in Malaysia and the Negrito populations in the Philippines were more closely related to non-Negrito local populations than to each other, suggesting Negrito and non-Negrito populations are linked by one entry event into East Asia; although other Negrito groups do share affinities, including with Indigenous Australians . A possible explanation of this

8446-580: The relationship between the ANE and EHG ancestral components is not yet well understood due to lack of samples that could bridge the spatiotemporal gap. During the Mesolithic, the EHGs inhabited an area stretching from the Baltic Sea to the Urals and downwards to the Pontic–Caspian steppe . Along with Scandinavian hunter-gatherers (SHG) and western hunter-gatherers (WHG), the EHGs constituted one of

8549-608: The removal of fossils from the earth. To avoid contaminating the ancient DNA , specimens are handled with gloves and stored in -20 °C immediately after being unearthed. Ensuring that the fossil sample is analyzed in a lab that has not been used for other DNA analysis could prevent contamination as well. Bones are milled to a powder and treated with a solution before the polymerase chain reaction (PCR) process. Samples for DNA amplification may not necessarily be fossil bones. Preserved skin, salt-preserved or air-dried, can also be used in certain situations. DNA preservation

8652-729: The resulting population, almost half-EHG and half-CHG, forming the genetic cluster known as Western Steppe Herder (WSH). WSH populations closely related to the people of the Yamnaya culture are supposed to have embarked on a massive migration leading to the spread of Indo-European languages throughout large parts of Eurasia. Haak et al. (2015) identified the EHG as a distinct genetic cluster in two males only. The EHG male of Samara (dated to ca. 5650–5550 BC) carried Y-haplogroup R1b1a1a* and mt-haplogroup U5a1d . The other EHG male, buried in Karelia (dated to ca. 5500-5000 BC) carried Y-haplogroup R1a1 and mt-haplogoup C1g . The authors of

8755-505: The same species are, but they are more related to each other than to chimpanzees. There have also been some attempts to decipher aDNA to provide valuable phenotypic information of ancient species. This is always done by mapping aDNA sequence onto the karyotype of a well-studied closely related species, which share a lot of similar phenotypic traits. For example, Green et al. compared the aDNA sequence from Neanderthal Vi-80 fossil with modern human X and Y chromosome sequence, and they found

8858-606: The splitting event between the two groups was over 50 kya, casting doubt on recent common ancestry between the two. Archaeogenetics has been used to understand the development of domestication of plants and animals. The combination of genetics and archeological findings have been used to trace the earliest signs of plant domestication around the world. However, since the nuclear, mitochondrial, and chloroplast genomes used to trace domestication's moment of origin have evolved at different rates, its use to trace genealogy have been somewhat problematic. Nuclear DNA in specific

8961-408: The study also identified a WHG cluster and an SHG cluster, intermediate between WHG and EHG. They suggested that EHGs harbored mixed ancestry from Ancient North Eurasians (ANEs) and WHGs. Researchers have proposed various admixture proportion models for EHGs from WHGs and ANEs. Posth et al. (2023) found that most EHG individuals carried c. 70% ANE ancestry and c. 30% WHG ancestry The WHG-like ancestry

9064-455: The study of blood groups. Fossil retrieval starts with selecting an excavation site . Potential excavation sites are usually identified with the mineralogy of the location and visual detection of bones in the area. However, there are more ways to discover excavation zones using technology such as field portable x-ray fluorescence and Dense Stereo Reconstruction. Tools used include knives , brushes , and pointed trowels which assist in

9167-585: The term genetics , meaning "the study of heredity". The term archaeogenetics was conceived by archaeologist Colin Renfrew . In February 2021, scientists reported the oldest DNA ever sequenced was successfully retrieved from a mammoth dating back over a million years. Ludwik Hirszfeld was a Polish microbiologist and serologist who was the President of the Blood Group Section of

9270-524: The three main genetic groups in the postglacial period of early Holocene Europe. The border between WHGs and EHGs ran roughly from the lower Danube , northward along the western forests of the Dnieper towards the western Baltic Sea . During the Neolithic and early Eneolithic , likely during the 4th millennium BC , EHGs on the Pontic–Caspian steppe mixed with Caucasus hunter-gatherers (CHGs) with

9373-483: The two populations. The high frequency of a single NRY lineage unique to Australia coupled with “low diversity of lineage-associated Y-chromosomal short tandem repeat (Y-STR) haplotypes” provide evidence for a “recent founder or bottleneck” event in Australia. But there is relatively large variation in mtDNA, which would imply that the bottleneck effect impacted males primarily. Together, NRY and mtDNA studies show that

9476-495: The world, leading to his discovery that blood groups are not influenced by the environment, and are inherited. In his book Genetics and the Races of Man (1950), Boyd categorized the world population into 13 distinct races, based on their different blood type profiles and his idea that human races are populations with differing alleles . One of the most abundant information sources regarding inheritable traits linked to race remains

9579-455: Was a decrease of blood group A from western Europe to India and the opposite for blood group B. He hypothesized that the east-to-west blood group ratio stemmed from two blood groups consisting of mainly A or B mutating from blood group O, and mixing through migration or intermingling. A majority of his work was researching the links of blood types to sex, disease, climate, age, social class, and race. His work led him to discover that peptic ulcer

9682-401: Was a massive influx of Near Eastern populations into Europe at the start of the Neolithic. This view led him “to strongly emphasize the expanding early farmers at the expense of the indigenous Mesolithic foraging populations.” mtDNA analysis in the 1990s, however, contradicted this view. M.B. Richards estimated that 10–22% of extant European mtDNA's had come from Near Eastern populations during

9785-497: Was a pottery workshop in province of Balochistan , Pakistan, that dates to 4,500 years ago; 12 blades and blade fragments were excavated there. These blades are 12–18 cm (5–7 in) long, 1.2–2.0 cm (0.5–0.8 in) wide, and relatively thin. Archaeological experiments show that these blades were made with a copper indenter and functioned as a potter's tool to trim and shape unfired pottery. Petrographic analysis indicates local pottery manufacturing, but also reveals

9888-510: Was found to be powerful in analyses of aDNA because it avoids potential loss of sample, substrate competition for templates, and error propagation in replication. The most common way to analyze an aDNA sequence is to compare it with a known sequence from other sources, and this could be done in different ways for different purposes. The identity of the fossil remain can be uncovered by comparing its DNA sequence with those of known species using software such as BLASTN. This archaeogenetic approach

9991-611: Was indeed taking place by the 4th millennium BC. Since the slag identified at Norşuntepe contains no arsenic, this means that arsenic in some form was added separately. A copper axe found at Prokuplje , Serbia contains the oldest securely dated evidence of copper-making, c.  5500 BC (7,500 years ago). The find in June ;2010 extends the known record of copper smelting by about 800 years, and suggests that copper smelting may have been invented in separate parts of Asia and Europe at that time rather than spreading from

10094-589: Was more common than previously thought and developed independently in Europe 1,500 years before the first tin bronze alloys in the Near East . In Britain, the Chalcolithic is a short period between about 2,500 and 2,200 BC, characterized by the first appearance of objects of copper and gold, a new ceramic culture and the immigration of Beaker culture people, heralding the end of the local late Neolithic. The multiple names result from multiple definitions of

10197-528: Was more dominant in blood group O, and that AB blood type mothers had a high male-to-female birth ratio. Arthur Mourant was a British hematologist and chemist . He received many awards, most notably Fellowship of the Royal Society . His work included organizing the existing data on blood group gene frequencies, and largely contributing to the genetic map of the world through his investigation of blood groups in many populations. Mourant discovered

10300-468: Was most likely not derived from the Oberkassel and Villabruna clusters directly, but from a related and yet unsampled Epigravettian population. The high contribution from Ancient North Eurasians is also visible in a subtle affinity of the EHG to the 40,000-year-old Tianyuan man from Northern China and other East/Southeast Asians, which can be explained by geneflow from a Tianyuan-related source into

10403-639: Was on a small scale. Ceramic similarities between the Indus Valley civilisation , southern Turkmenistan , and northern Iran during 4300–3300 BC of the Chalcolithic period suggest considerable mobility and trade. The term "Chalcolithic" has also been used in the context of the South Asian Stone Age . In Bhirrana , the earliest Indus civilization site, copper bangles and arrowheads were found. The inhabitants of Mehrgarh in present-day Pakistan fashioned tools with local copper ore between 7000 and 3300 BC. The Nausharo site

10506-419: Was previously used for that purpose. It also provided material that could be used to appraise the theories of population genetics . William Boyd was an American immunochemist and biochemist who became famous for his research on the genetics of race in the 1950s. During the 1940s, Boyd and Karl O. Renkonen independently discovered that lectins react differently to various blood types, after finding that

10609-437: Was produced in eastern Turkey ( Malatya Province ) at two ancient sites, Norşuntepe and Değirmentepe , around 4200 BC. According to Boscher (2016), hearths or natural draft furnaces, slag , ore, and pigment had been recovered throughout these sites. This was in the context of Ubaid period architectural complexes typical of southern Mesopotamian architecture. Norşuntepe site demonstrates that some form of arsenic alloying

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